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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38600 | AT | Annotation by Michelle Graham. TAIR10: HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888 | SoyBase | E_val: 0 | ISS |
| GO:0006464 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular protein modification process | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0168 | KOG | Putative ubiquitin fusion degradation protein | JGI | ISS | |
| PTHR11254 | Panther | UBIQUITIN-PROTEIN LIGASE | JGI | ISS | |
| PTHR11254:SF73 | Panther | gb def: riken cdna 5730496c04 gene [mus musculus] | JGI | ISS | |
| PF00632 | PFAM | HECT-domain (ubiquitin-transferase) | JGI | ISS | |
| UniRef100_G7JNF2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase UPL3 n=1 Tax=Medicago truncatula RepID=G7JNF2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LPS2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPS2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03640 not represented in the dataset |
Glyma12g03640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g11490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g032500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03640.1 sequence type=CDS gene model=Glyma12g03640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACCACTCGTTCCAGCAAGCGTGCACGCCTCTCTTCTTCTTCCTCCGCTTCCGCCGCCGCTGCCGCCGCATCCGTTTCTTCCGTGAACACTCGCTCCCGTTCATCCCGGACTAAGGAACCCTTGCCCCCTAAGAATCCTCCTCCCATGGACTCTGCCAATGAATCCTCTGGCTCCCGCCGCGATCGCCGCAACAAAGACAACTCCGACAAGGGGAAGGAGAAAGAGCATGATGTTAGGATTAGGGACAGGGATGCTGACAGAGGGCTGGCATTGAACATGGATGGTGGCGGAGACGATGATGACAATGACAGCGAAGGCGGTGTGGGGATTTTGCATCAAAACTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCATCATCGGCTATGGGTTCTGCGTCTTCCTCTCACCAGAGTGGGAGGCTGAAAAAGATCCTCTTCGGATTGCGGGCGGATGGCGAAGAAGGGCGGCAGGTTGAAGCATTGACACAGCTCTGTGAGATGCTTTCGATTGGGACTGAAGAGTCACTTAGTACATTCTCTGTTGATTCGTTTGTTCCCGTGCTTGTGGGGTTGTTGAATCACGAGAGCAACCCTGACATCATGCTTCTTGCTGCCAGAGCATTGACCCATCTCTGTGATGTGCTCCCTTCATCTTGTGCTGCTGTTGTGCATTATGGTGCCGTGTCAATCTTTTGTGCGAGGTTGCTCACCATAGAATACATGGACCTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAAAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCACGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCTTTTGCGTCATCTCCAGACAAATTAGATGAATTGTGCAACCATGGACTTGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGGGGTGGTCAGGCTTCTCTCAGCACGCCGACATATACTGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCTCCTCTTGGAGCTAAAACCTTACTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAAGGCCTCTGTTTCTCCTGCATTAAGTAGGCCGCCAGAACAGATATTTGAGATTGTAAACCTCACGAATGAGCTTCTGCCTCCATTGCCACATGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCCATTGTAAAGAAGTCTCCTGCTGGTAGCTCTGGAAAACAAGAAGACACAAATGGAAATGTTCCTGAGATATCGGCTCGTGAGAAACTATTAAATGATCAGCCTGAACTACTTAAGCAATTTGCGATGGATCTCCTTCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGCCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAACTGGAAATTCGACCAATATCTCTACACAGGCATCTTCTGCCGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGCAGTGGGAATTCCAATCCTGATGGAAATCCTTTGGACGATTTGAAAACTCCAGTTTCAGTAAATGTTGGTTCACCTCCTAATTCTGTGGATATGCCAACAGTAAATTCCAGTATTCGGTTATCTGTTAGTACAGCTGCCAAAGCTTTTAAAGATAAGTATTTTCCTTCAGATCCTGGGGCTGCTGAAGTGGGTATTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCTGATGAACAAAGGACCAATGGAAAGGGGAAATCTAAAACTTCTGGATTTGGTCTGGAAGAGTATTTAATTGGGATCATAGCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGGGTATCTACTTTTGAATTCATTGGTAGTGGTGTTGTTGCAGCTCTGTTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGACCATTAGAAACCCACCTTCCCAAGCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCACTACCTTCTACTACTGAAGATGGGACTGTGGCTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCCTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCAGCCCTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGAAAGGTCACTTAGGGATTATTCATCCAATGTTGTACTGGTTGATCCATTAGCAAGTTTAGCAGCAATTGAGGAATTTGTTTGGCCTCGTATCCAACGAAGTGAATTGGGTCAGAAGTCCACTGTACCTGCTGGGAATTCTGAATCTGGGACAACTCCTACAGGAGCTGGTGTATCCTCTCCAACTACCCATCGCCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGATACATCTAGAAAGGAAATAAGTCAAGATAAAAGCACAAGCTCTTCCAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGACCTCAGACCAGAAATGCTACTCGCAGAAGAGAAGCTCTTGATAAAGATGCTCAAATAAAGCCTGTAAACGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCCCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGATGATGTACTGAGGGATGATTCTCTTCCTGTTTGTTCACCTGACAAAGTACATGATGTGAAATTGGGCGACATAGTGGAGGAGAGTAATGTTGCTCCTGCAACTAGTGATGGTGGCCAGACTAATGCTGCCTCAGGTTCTAGTAGCAAAGCTGGTACAGTCAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATACCTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGAAGAGATCGACTAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATATTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATTTATCAGGCAATTCAAAGGCAGCTTGTGCTAGATGAAGATGATGAGGAGAGATTTGCTGGCAGTAGTGACTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGGCAGAGAACCAGACAGATAGGACTCCCCCTGGAGGTTCAACCTCTAATGCTTCAAAATCTGGCAAATCTGGGTCTGTATTGAATTCTAGTTCTGAAGACAAGCTAAATCAGACATCTGTATTAGATAGTATTTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGCGGGTGCTTGAGGGTTTGAACCAACTTGCATCTCGTTTGAGGGCCCAAGTGGTTACTGATAGCTTTGCAGAGGGAAAAATTTTGGATTTAGTTGAGCTAAGTTTTACCAGTGGTGCTAGGGTTCCTACAGAGGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTATGTAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTATCTAAAGCGTGCCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTATTTTTATTCAACTGCCTTTGGGTTATCTCGTGCATTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTCTCTCGAAATCGCATTTTGGATTCTGCTGCTAAGGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACCGGTCTGGGTCCCACTCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAGTTGTACTTCAAATGTGGAGATCAGGTTCTTCAGAGAAATATCAAATGGAAATTGATGGAGATGAAAAGAAAATGAAAAATAGTGAAGGCTCTTTTGTTGGAGATGGAGAACTCGTTCAAGCTCCTCTTGGGCTGTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCAGAGGGTACCCAAATTTTCAAAGTGATTGAATATTTCCGATTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCTTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAATGTTTTATAGAATCTATTGGTGGTAGCTACACTGATACCTTTGCTAATTTGCATTTTCGTGGGGCCCCAATAGAAGATCTCTGCTTGGACTTCACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGAAATTGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTTGAGGCAACGGTTAAGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAACGGGAATGGGCCTTCAGAATTAGCAGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA
>Glyma12g03640.1 sequence type=predicted peptide gene model=Glyma12g03640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAAAAASVSSVNTRSRSSRTKEPLPPKNPPPMDSANESSGSRRDRRNKDNSDKGKEKEHDVRIRDRDADRGLALNMDGGGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSKASVSPALSRPPEQIFEIVNLTNELLPPLPHGTISLPIISNMFLKGPIVKKSPAGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLLPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILTGNSTNISTQASSAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKTPVSVNVGSPPNSVDMPTVNSSIRLSVSTAAKAFKDKYFPSDPGAAEVGITDDLLHLKNLCMKLNAGADEQRTNGKGKSKTSGFGLEEYLIGIIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPLETHLPKLRQQALTRFKLFIAVALPSTTEDGTVAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGERSLRDYSSNVVLVDPLASLAAIEEFVWPRIQRSELGQKSTVPAGNSESGTTPTGAGVSSPTTHRHSTRSRSSVNIGDTSRKEISQDKSTSSSKGKGKAVLKPAQEEARGPQTRNATRRREALDKDAQIKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHDDVLRDDSLPVCSPDKVHDVKLGDIVEESNVAPATSDGGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDEERFAGSSDYVSSDGSRLWGDIYTITYQRAENQTDRTPPGGSTSNASKSGKSGSVLNSSSEDKLNQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDSFAEGKILDLVELSFTSGARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSGSSEKYQMEIDGDEKKMKNSEGSFVGDGELVQAPLGLFPRPWPANADASEGTQIFKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKCFIESIGGSYTDTFANLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKTGIMRQMEAFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSELADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS*
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