Glyma12g03610 - SoyBase

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Report for Sequence Feature Glyma12g03610

Feature Type:	gene_model
Chromosome:	Gm12
Start:	2416813
stop:	2422717
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g03610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35000	AT	Annotation by Michelle Graham. TAIR10: ascorbate peroxidase 3 \| chr4:16665007-16667541 REVERSE LENGTH=287	SoyBase	E_val: 2.00E-160	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005778	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0016688	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ascorbate peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_B0M196	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal ascorbate peroxidase n=1 Tax=Glycine max RepID=B0M196_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B0M196	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peroxisomal ascorbate peroxidase n=1 Tax=Glycine max RepID=B0M196_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g03610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03610 not represented in the dataset	Glyma12g03610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g03610

Paralog	Evidence	Comments
Glyma11g11460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g03610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g032300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g03610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g03610

Limit To All Plant Sequences

>Glyma12g03610.2   sequence type=transcript   gene model=Glyma12g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTTCCTAATTTGAAGCTTGTGAGGCAATTAAGTAATGTGACGTGGCAAGAGAGAAGTAGAATAATAATATGCGATGGGATTGGGAATAGGAACAGCACCCACACCCATACAAATTACAATACAATTATCCGTTTTCCATTCACATTTGTCAGTTAGTTAGCAGAGTGCAGTGACTTGAGAATGGCCTTGCCAGTGGTCGTCGACGCAGAGTACCTCAAAGAGGTCGACAAGGCTCGCCGCGATCTCCGCGCACTCATCGCTAACAGGAACTGCGCTCCTCTCATGCTTCGATTGGCCTGGCACGATGCCGGAACTTACGATGCTAAGACCAAGACTGGTGGACCTAACGGTTCGATCCGTAACGAGGAAGAGTATTCTCACGGCGCCAACAATGGCTTGAAGAAGGCTATTGATTTCTGTGAGGAAGTGAAGGAAAAACATCCTAAAATTACATATGCAGATCTCTACCAGCTTGCGGGTGTTGTTGCAGTTGAGGTTACCGGGGGTCCCACAATTGATTTCGCTCCTGGTAGAAGGGATTCAAAAATATCTCCTAATGAAGGGCGGCTTCCTGATGCTAAAAAAGGTGTTTCACATCTCCATGATATCTTTTATCGAATGGGCTTGACTGACCGAGATATTGTTGCACTATCTGGAGGACATACACTGGGGAGAGCACATCCAGAGAGATCAGGGTTTGATGGCCCTTGGACAGAGGACCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTTTTGAAAGAAGATTCTGCTGGGCTGCTTAAACTTCCAACAGACAAGGCTTTATTGGAGGATGCTGAATTTCGCCGTTATGTTGAGCTATATGCAAAGGTAATTGAGATTAATTCAAATAACCACCGTGTGAAATTTGTTTGACGCTGTGTCCTAATTACCAATTAATGTTTCTCAATAGCATTTCATGGGTCTATTTGTTTACTATAAACACCATGAAGCTTGTAATCATATTGCATTAATTATTAGATCAATCTTTTGGCCTGAGGTACCCACTAGGGTTGGCTTAATGGTTGGTCAGGAATTAATAAAACTACGTACTTTGCCAACAATTGACTAAACTTTGGTCTTTTTTCCTTCTTTAGACTAATGAAACTAAATAACATGCCTGATAGTGTTAGCACGCACTTGTATGTAGAGTTGTAGAATAACTTATCTAAGACATCAGTGTGAAGTTTCTATTTTGCTCTAAAGCTATTAAAGAAAATTAAGAGCATACTGTTTTCAGCAAAGTTCTGACTGCTGTCAATGCACCATTGAATTGTGTGAATCTGTCTGCCATCTCATTTTTATACTGTCATTCTGGCAGGACGAGGATGCATTTTTTCGAGATTATGCTGAATCACATAAGAAACTTTCAGAGCTAGGCTTTGTGCCAAGTTCAAAGCCGATTTCTATTAAGGATGGGACCATACTGGCACAAGGTGCTGTAGGAGTTGTAGTTACTGCCGCAGTGGTGATCATCAGTTACTTGTATGAAGTTCGCAAAAGAGGGAAGTAAACTGGACTTGTTCATTTCACTTGGCTGTTACGTTTGCGTGACCCTGACCCATAATGTGAAAACAGGGTTCATTTTTGCAGCTTCAGATTCTGTTTACTTAGTACCAATAAAGAATAATGCCACAGCCATTCAGACTTTTTTTTATATGAATAGACTAAAACTATCCCTAAATACTCAATTTGGTAGCAACTTCCTAATATGTTAATACAAATTTTAGCATTCCCAGTTACGTGTTGTTCTCTGAAAGGTTAGAGGGTAGACATGCTCAAAGAGACTAATTTGTTGTGTTTGTTACGCGCGAGGAAATCAGAATTATGAAAACCGTGACTGCACTAGCCGAGAGAATTGTGAAAATCATGCTTATAATTAGACTGCAGTAGCATAGAGAATTCTCCTGTTAAGTGTTAACCAGGTGTAGATAGTGTTTTTAATATACGATTTATACTTTTTCATTGATAATAAATTGCTAATTTTTCTCA

Coding sequences of Glyma12g03610

Limit To All Plant Sequences

>Glyma12g03610.1   sequence type=CDS   gene model=Glyma12g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGCCAGTGGTCGTCGACGCAGAGTACCTCAAAGAGGTCGACAAGGCTCGCCGCGATCTCCGCGCACTCATCGCTAACAGGAACTGCGCTCCTCTCATGCTTCGATTGGCCTGGCACGATGCCGGAACTTACGATGCTAAGACCAAGACTGGTGGACCTAACGGTTCGATCCGTAACGAGGAAGAGTATTCTCACGGCGCCAACAATGGCTTGAAGAAGGCTATTGATTTCTGTGAGGAAGTGAAGGAAAAACATCCTAAAATTACATATGCAGATCTCTACCAGCTTGCGGGTGTTGTTGCAGTTGAGGTTACCGGGGGTCCCACAATTGATTTCGCTCCTGGTAGAAGGGATTCAAAAATATCTCCTAATGAAGGGCGGCTTCCTGATGCTAAAAAAGGTGTTTCACATCTCCATGATATCTTTTATCGAATGGGCTTGACTGACCGAGATATTGTTGCACTATCTGGAGGACATACACTGGGGAGAGCACATCCAGAGAGATCAGGGTTTGATGGCCCTTGGACAGAGGACCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTTTTGAAAGAAGATTCTGCTGGGCTGCTTAAACTTCCAACAGACAAGGCTTTATTGGAGGATGCTGAATTTCGCCGTTATGTTGAGCTATATGCAAAGGACGAGGATGCATTTTTTCGAGATTATGCTGAATCACATAAGAAACTTTCAGAGCTAGGCTTTGTGCCAAGTTCAAAGCCGATTTCTATTAAGGATGGGACCATACTGGCACAAGGTGCTGTAGGAGTTGTAGTTACTGCCGCAGTGGTGATCATCAGTTACTTGTATGAAGTTCGCAAAAGAGGGAAGTAA

>Glyma12g03610.2   sequence type=CDS   gene model=Glyma12g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGCCAGTGGTCGTCGACGCAGAGTACCTCAAAGAGGTCGACAAGGCTCGCCGCGATCTCCGCGCACTCATCGCTAACAGGAACTGCGCTCCTCTCATGCTTCGATTGGCCTGGCACGATGCCGGAACTTACGATGCTAAGACCAAGACTGGTGGACCTAACGGTTCGATCCGTAACGAGGAAGAGTATTCTCACGGCGCCAACAATGGCTTGAAGAAGGCTATTGATTTCTGTGAGGAAGTGAAGGAAAAACATCCTAAAATTACATATGCAGATCTCTACCAGCTTGCGGGTGTTGTTGCAGTTGAGGTTACCGGGGGTCCCACAATTGATTTCGCTCCTGGTAGAAGGGATTCAAAAATATCTCCTAATGAAGGGCGGCTTCCTGATGCTAAAAAAGGTGTTTCACATCTCCATGATATCTTTTATCGAATGGGCTTGACTGACCGAGATATTGTTGCACTATCTGGAGGACATACACTGGGGAGAGCACATCCAGAGAGATCAGGGTTTGATGGCCCTTGGACAGAGGACCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTTTTGAAAGAAGATTCTGCTGGGCTGCTTAAACTTCCAACAGACAAGGCTTTATTGGAGGATGCTGAATTTCGCCGTTATGTTGAGCTATATGCAAAGGTAATTGAGATTAATTCAAATAACCACCGTGTGAAATTTGTTTGA

Predicted protein sequences of Glyma12g03610

Limit To All Plant Sequences

>Glyma12g03610.1   sequence type=predicted peptide   gene model=Glyma12g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPVVVDAEYLKEVDKARRDLRALIANRNCAPLMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKKAIDFCEEVKEKHPKITYADLYQLAGVVAVEVTGGPTIDFAPGRRDSKISPNEGRLPDAKKGVSHLHDIFYRMGLTDRDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKEDSAGLLKLPTDKALLEDAEFRRYVELYAKDEDAFFRDYAESHKKLSELGFVPSSKPISIKDGTILAQGAVGVVVTAAVVIISYLYEVRKRGK*

>Glyma12g03610.2   sequence type=predicted peptide   gene model=Glyma12g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPVVVDAEYLKEVDKARRDLRALIANRNCAPLMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKKAIDFCEEVKEKHPKITYADLYQLAGVVAVEVTGGPTIDFAPGRRDSKISPNEGRLPDAKKGVSHLHDIFYRMGLTDRDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKEDSAGLLKLPTDKALLEDAEFRRYVELYAKVIEINSNNHRVKFV*

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