SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38640 | AT | Annotation by Michelle Graham. TAIR10: Plasma-membrane choline transporter family protein | chr4:18059884-18062091 REVERSE LENGTH=556 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG1362 | KOG | Choline transporter-like protein | JGI | ISS | |
| PTHR12385 | Panther | CTL TRANSPORTER | JGI | ISS | |
| PTHR12385:SF3 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04515 | PFAM | Plasma-membrane choline transporter | JGI | ISS | |
| UniRef100_I1LPR3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPR3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q93YN6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Plasma-membrane choline transporter family protein n=1 Tax=Arabidopsis thaliana RepID=Q93YN6_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma12g03550 not represented in the dataset |
Glyma12g03550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g11380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g031600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03550.1 sequence type=CDS gene model=Glyma12g03550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCTAGCGAGGATCCGAACAACAAAGTCGATTTTCCGTACGAGTCCCCGGCATCGCAACCCTTTCTATCGAAACCCTCGTACCCTTCATCGTCTTCTTCGGCTGTGGAAGAAGAATCGGAGTCAAACCAGCAATTCCATCACATCACTTACAATTCAGGTCCTCGCTCCTTCAAGGACCTTCCTTTCCTCATCCTCTTCCTTCTCTTCGTACTTTCCTCCTTCGCCTTTGGCATCTTCGCCATCATCCACCGAAACAACAGCTACCCCTCTCTCTCCTCCTTCACCTACGACCCCACCACCACCTCCTGCGTCCTAAACCCTTCTAATTCCTCCTCCTCCTCCTCCGTCTCCACGCTCTCCCTCGTCGACACAACATCATCCGTTTCTCCGAAATTGGTGAAGGGTCTCATATGGACTCTCGTCATCACCTTCGTTCTCAGCGTCCCCTTGTGCTGGGCTCTGCTTCTCTTACTCAAGCATTACACCAAACAGATTGTCTACGCTGCTATTCCACTCTTTATCGCCATCCCCGTTTTCCTCAACGTGTATTGGTTCGTGGCCTGCACCCTCGGCGCGTCTTGCAGCAACGCTTTCCCCCTCGCGTACCGGGTTCTGATTTTGGTGTTCTTGTTTTTGGTGATTGGGATCATTGTGTGGATCTTGGTGGTGAATTGGCATCGCGTGGAGCTCACGGTGAGCATAATCGGGGTCGCTTCCCACGCACTTTCGAGGAACATGGCTTTGTTCGGGGTGCTGCCTTGTTTGTCTGTTGGGCTGGTGCTGTATTTTGTTCCAATCGTGGTTTTCATGGTGTTTGCGAGGTTTAATGGGAAGATTGTTGTGAAGAATTTGAAGAGTGGATATGACTGTGAATGGAAGGAGGATTCTTGGGTGCCAGCTTATTATGCTTTGGCTGTTCTCACCATGTTGTGGTCTGCGGCAGCTATGGTTGAAGCTCAAGTTTATGTCATCAGTGGGACTATTGCTAATTGGTATTTCTCCAAGGAACATCAAACTCCTAAGCGGAGTATTCGAACTCCTCTCAGAAATGTTTTTGGTCCTTCTTCTGGCACGATATGTTTGTCAGGATTGCTTGTCTGTGTTGTTCGAATGGTGCGTTCTGCGGTTGATAGTGCAAGACAAGAGGATACTCCTGGGATAGTGAACCTTGTGTTGCGGTGCTGTGTAAATGCATTGCTGACAGCAGTTGATTTTCTTAACAAGTTTACCATAAACTTTGCTGCAATAACTGGTGAAGCCTACTGCTCTTCTGCAAGGATGACATATGAACTTCTAAGACGCAATCTTCTCTCTGCTGTTTTTGTGGAGACCATCTCATCTCGCATCCTGGCTGGAATTGTCTTTGTTTTTTCTGCATCATACACAATAGTGGCCTGTGTTATCTTAAAAGCTGGTACCAATCTTGGGTCTGACTCATATTTTGTGGCTGCGATGGCATGGGTGCTACTGATGGTAGTGCTGGGTTACCTCGTGCATGTGCTAGACAACGTAATTGACACAATTTACGTCTGCTATGCGATAGACCGGGATAGAGGAGAGGTTTGTAAACAAGACGTCCATGAGGTTTACATTCAACTACCCATTAGTAGAAGTCTCAGACAGTCTGTTACTACAAGAACTCTAGGTGTGTAA
>Glyma12g03550.1 sequence type=predicted peptide gene model=Glyma12g03550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSSEDPNNKVDFPYESPASQPFLSKPSYPSSSSSAVEEESESNQQFHHITYNSGPRSFKDLPFLILFLLFVLSSFAFGIFAIIHRNNSYPSLSSFTYDPTTTSCVLNPSNSSSSSSVSTLSLVDTTSSVSPKLVKGLIWTLVITFVLSVPLCWALLLLLKHYTKQIVYAAIPLFIAIPVFLNVYWFVACTLGASCSNAFPLAYRVLILVFLFLVIGIIVWILVVNWHRVELTVSIIGVASHALSRNMALFGVLPCLSVGLVLYFVPIVVFMVFARFNGKIVVKNLKSGYDCEWKEDSWVPAYYALAVLTMLWSAAAMVEAQVYVISGTIANWYFSKEHQTPKRSIRTPLRNVFGPSSGTICLSGLLVCVVRMVRSAVDSARQEDTPGIVNLVLRCCVNALLTAVDFLNKFTINFAAITGEAYCSSARMTYELLRRNLLSAVFVETISSRILAGIVFVFSASYTIVACVILKAGTNLGSDSYFVAAMAWVLLMVVLGYLVHVLDNVIDTIYVCYAIDRDRGEVCKQDVHEVYIQLPISRSLRQSVTTRTLGV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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