SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34950 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr4:16642544-16644759 REVERSE LENGTH=567 | SoyBase | E_val: 0 | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR21576 | Panther | UNCHARACTERIZED NODULIN-LIKE PROTEIN | JGI | ISS | |
| PTHR21576:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF06813 | PFAM | Nodulin-like | JGI | ISS | |
| UniRef100_I1LPR1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LPR1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SW40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Major facilitator family protein n=2 Tax=Arabidopsis thaliana RepID=Q9SW40_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma12g03520 not represented in the dataset |
Glyma12g03520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g11350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g031300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03520.2 sequence type=transcript gene model=Glyma12g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGACTAGAAATAAAAAAAAAAAGAAGGAAAAAAAATCCTCCACGGTTCCCAGCAATAGGCACTAATATTCAACGTTACGGAGAAGGACAGAGGAAACTTTGGTGACATTGTTATAAGTAGAACACATGCGTCCTCCATTTCTCCATGTGGATTAAAGCGATGGGCAGCACTAGCAGCTATGTTTCAAGCAGCAGCAGCAGCAGCAAATGGCTGGGCTTCGTGGCGGCCGTGTGGATTCAATGCATCTCCGGCAACAACTACACTTTCTCAAACTACTCCGACGCCCTCAAATCCCTCATGCACCTCACTCAGCTCCAACTCAACAACCTCTCCGTCGCTAAAGACGTTGGCAAAGCCTTTGGGCTTCTGGCGGGCCTCGCCTCCGACCGCTTCCCCACTTGGGCTATTCTCCTCATTGGCTCCGTCGAAGGCCTTATTGGCTACGGAGCCCAATGGCTCGTTGTTAGCCAGAGAATTCAGCCCCTCCCTTACTGGCAGCTGTGCGTGTTTCTCTGCATGGGAGGCAACAGCACCACTTGGATGAACACTGCCGTTTTGGTAACATGCATTCGGAACTTCCGTTCAAACAGAGGACCCGTTTCGGGGATTCTGAAAGGCTTTGTAGGCTTGAGCACTGCGATATTCACTACTCTCTGTTCCGCGCTCTTCGCCGACGACCCTGGCTCCTTCCTCATCATGCTCTCTGTCATTCCCTTCGCAGTTTGCCTCACCGGTGTGTTTTTCCTCCGGGAGACTCCCCCCGACGTCTCCGCCGGTGATGACGACGGCGAAGAGGTAAAGTACTTCGGCTTCTTCAACGTGGTGGCGGTGGCGGTGGCGCTTTTTCTGTTGGCGTATGGGTTCATCCCCAGCCCTAGCATGTTGGTGTCAAGATTGTTTGTGGCGGTTTTGGTGGTGATGCTGGCTTCGCCGTTGGGGATCCCGGTGTACTCGTACTTGAAGGGACGGCTCGGAGGGGGAAATGACGTGGAGAGGCAGAGGCTGAAGGAGCCGTTGCTTCAGATTCCGGAGAAGGAGAATGAAGGCGTGGTGGCGGAGGAAGAGGCGGAGATAGTGAAGAGGGCGCCGGAGGTGGGTGAGGAGCACACGATAGTGGAGGCGCTGAGAAGCGTAGATTTTTGGATCTTGTTCGTGTCGTTTTTGTGTGGGGTTGGGACGGGTTTGGCAGTGATGAACAATATGGGTCAAATCGGGTTGGCGCTCGGATACCCAGATATCTCGCTCTTTCTGTCTTTGACAAGTATTTTCGGGTTTTTCGGACGGATAATCTCGGGTACCGTTTCGGAGTTCACCATCAAGTAAGTCCTTTTTTCTTTTTCGAACAAGCCATCAAATCATCAATCAAGTCTTATCGTTACTTTCTTTATTTTTTATTATAAGATTTTTTTTCATTAATTCATATTTCTTCAAAAAATAATTAATTTTATTAATTATATTAAATTTCTCAATTATTTACATTATTATTTTTTATTTCTTTATCTATTTAATTATTTTTCATTAATATTTTAAAGAATGAATAATTGAATAAAAAAATAATTAATATATTTAAAAATCAGAAAAAATCTTATAAAAAAAAGAAAAAAAACAAATTTGTTTATGAAAAAAGATGTTGTAATCAGGAATGAAAGAAATACTACTGTATTAAGTACTAGTATCAACCAACTTGCATTTTTCTTTTTAAAATTTTTGACTGGACCAACTTGCATTTTTATGAGACTAATTTATGCACCTTTTACTTAACTTTTTCCCCCTCCTCTTTCTCTTTCTCTTGAAGGAAATTATCAATATAATACTTTTGCCCAACAACGTGTTCCGCGAGTGTTTTTTAGATCAATTTTATGAGTACAGTTTATTCAAATAAGTTAGAGAAACTTTATAAGTTGGAGTAGTAGTTTATTTTTTGAATTTGTGATTTTGAAACACCGCATATTCTTAACCATATTTACATTTATTAAGAATCATCTGTCTAATCATACATTTACATTTACATTTACTTATTGGATTGTTAAAATATTCGTGGGAATAACGTAGATATTTACGGTTTCTGCTATTTTCTTGTTTACTTATTCACATTATTTCTGTTATTTTCACTTTACAGGTTACTCTTTTCTTGTTAATAAAAAAATGAAGGGATTTCATTTACTATTTTTGCATTCTTATATTTTTTGCAAAGAAAATGCTAAATATAAACATAAGAGTACCATTTTTTTTTAACGTAAGTTGCCTA
>Glyma12g03520.1 sequence type=CDS gene model=Glyma12g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGATTAAAGCGATGGGCAGCACTAGCAGCTATGTTTCAAGCAGCAGCAGCAGCAGCAAATGGCTGGGCTTCGTGGCGGCCGTGTGGATTCAATGCATCTCCGGCAACAACTACACTTTCTCAAACTACTCCGACGCCCTCAAATCCCTCATGCACCTCACTCAGCTCCAACTCAACAACCTCTCCGTCGCTAAAGACGTTGGCAAAGCCTTTGGGCTTCTGGCGGGCCTCGCCTCCGACCGCTTCCCCACTTGGGCTATTCTCCTCATTGGCTCCGTCGAAGGCCTTATTGGCTACGGAGCCCAATGGCTCGTTGTTAGCCAGAGAATTCAGCCCCTCCCTTACTGGCAGCTGTGCGTGTTTCTCTGCATGGGAGGCAACAGCACCACTTGGATGAACACTGCCGTTTTGGTAACATGCATTCGGAACTTCCGTTCAAACAGAGGACCCGTTTCGGGGATTCTGAAAGGCTTTGTAGGCTTGAGCACTGCGATATTCACTACTCTCTGTTCCGCGCTCTTCGCCGACGACCCTGGCTCCTTCCTCATCATGCTCTCTGTCATTCCCTTCGCAGTTTGCCTCACCGGTGTGTTTTTCCTCCGGGAGACTCCCCCCGACGTCTCCGCCGGTGATGACGACGGCGAAGAGGTAAAGTACTTCGGCTTCTTCAACGTGGTGGCGGTGGCGGTGGCGCTTTTTCTGTTGGCGTATGGGTTCATCCCCAGCCCTAGCATGTTGGTGTCAAGATTGTTTGTGGCGGTTTTGGTGGTGATGCTGGCTTCGCCGTTGGGGATCCCGGTGTACTCGTACTTGAAGGGACGGCTCGGAGGGGGAAATGACGTGGAGAGGCAGAGGCTGAAGGAGCCGTTGCTTCAGATTCCGGAGAAGGAGAATGAAGGCGTGGTGGCGGAGGAAGAGGCGGAGATAGTGAAGAGGGCGCCGGAGGTGGGTGAGGAGCACACGATAGTGGAGGCGCTGAGAAGCGTAGATTTTTGGATCTTGTTCGTGTCGTTTTTGTGTGGGGTTGGGACGGGTTTGGCAGTGATGAACAATATGGGTCAAATCGGGTTGGCGCTCGGATACCCAGATATCTCGCTCTTTCTGTCTTTGACAAGTATTTTCGGGTTTTTCGGACGGATAATCTCGGGTACCGTTTCGGAGTTCACCATCAAGAAAGCTGCAACACCTAGGCCTCTTTGGAATGCAGCATCTCAGCTTCTAATGGCGGTAGGTTACATACTCCTGGCCATGGCTATGCCAGGTTCCCTATACATTGGGTCTATTTTAGTTGGCATGTGTTATGGAGTGAGGCTTGCCATTACAGTCCCTACAGCCTCAGAGTTATTTGGACTCAAATATTATGGTCTCATCTATAACATTCTCATCCTTAACCTTCCTCTCGGTTCTTTCCTTTTCTCTGGTCTGCTTGCTGGCATACTCTATGATATGGAGGCAACTACAACAGAGGGAGGAGGCAACACATGTGTTGGAGGTCATTGTTACAGGCTAGTCTTTATTGTCATGACTGGAGCATGCATTGTTGGATTCTTCTTAGACATTCTGTTGTCAATCAGAACCAAGAATATTTACACCAAGATTTCCACGAGCAAGAAGCCCAAGAAATCCTTAGGAACATCAAATAGGCAGTGA >Glyma12g03520.2 sequence type=CDS gene model=Glyma12g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGATTAAAGCGATGGGCAGCACTAGCAGCTATGTTTCAAGCAGCAGCAGCAGCAGCAAATGGCTGGGCTTCGTGGCGGCCGTGTGGATTCAATGCATCTCCGGCAACAACTACACTTTCTCAAACTACTCCGACGCCCTCAAATCCCTCATGCACCTCACTCAGCTCCAACTCAACAACCTCTCCGTCGCTAAAGACGTTGGCAAAGCCTTTGGGCTTCTGGCGGGCCTCGCCTCCGACCGCTTCCCCACTTGGGCTATTCTCCTCATTGGCTCCGTCGAAGGCCTTATTGGCTACGGAGCCCAATGGCTCGTTGTTAGCCAGAGAATTCAGCCCCTCCCTTACTGGCAGCTGTGCGTGTTTCTCTGCATGGGAGGCAACAGCACCACTTGGATGAACACTGCCGTTTTGGTAACATGCATTCGGAACTTCCGTTCAAACAGAGGACCCGTTTCGGGGATTCTGAAAGGCTTTGTAGGCTTGAGCACTGCGATATTCACTACTCTCTGTTCCGCGCTCTTCGCCGACGACCCTGGCTCCTTCCTCATCATGCTCTCTGTCATTCCCTTCGCAGTTTGCCTCACCGGTGTGTTTTTCCTCCGGGAGACTCCCCCCGACGTCTCCGCCGGTGATGACGACGGCGAAGAGGTAAAGTACTTCGGCTTCTTCAACGTGGTGGCGGTGGCGGTGGCGCTTTTTCTGTTGGCGTATGGGTTCATCCCCAGCCCTAGCATGTTGGTGTCAAGATTGTTTGTGGCGGTTTTGGTGGTGATGCTGGCTTCGCCGTTGGGGATCCCGGTGTACTCGTACTTGAAGGGACGGCTCGGAGGGGGAAATGACGTGGAGAGGCAGAGGCTGAAGGAGCCGTTGCTTCAGATTCCGGAGAAGGAGAATGAAGGCGTGGTGGCGGAGGAAGAGGCGGAGATAGTGAAGAGGGCGCCGGAGGTGGGTGAGGAGCACACGATAGTGGAGGCGCTGAGAAGCGTAGATTTTTGGATCTTGTTCGTGTCGTTTTTGTGTGGGGTTGGGACGGGTTTGGCAGTGATGAACAATATGGGTCAAATCGGGTTGGCGCTCGGATACCCAGATATCTCGCTCTTTCTGTCTTTGACAAGTATTTTCGGGTTTTTCGGACGGATAATCTCGGGTACCGTTTCGGAGTTCACCATCAAGTAA
>Glyma12g03520.1 sequence type=predicted peptide gene model=Glyma12g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWIKAMGSTSSYVSSSSSSSKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGKAFGLLAGLASDRFPTWAILLIGSVEGLIGYGAQWLVVSQRIQPLPYWQLCVFLCMGGNSTTWMNTAVLVTCIRNFRSNRGPVSGILKGFVGLSTAIFTTLCSALFADDPGSFLIMLSVIPFAVCLTGVFFLRETPPDVSAGDDDGEEVKYFGFFNVVAVAVALFLLAYGFIPSPSMLVSRLFVAVLVVMLASPLGIPVYSYLKGRLGGGNDVERQRLKEPLLQIPEKENEGVVAEEEAEIVKRAPEVGEEHTIVEALRSVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDISLFLSLTSIFGFFGRIISGTVSEFTIKKAATPRPLWNAASQLLMAVGYILLAMAMPGSLYIGSILVGMCYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTTEGGGNTCVGGHCYRLVFIVMTGACIVGFFLDILLSIRTKNIYTKISTSKKPKKSLGTSNRQ* >Glyma12g03520.2 sequence type=predicted peptide gene model=Glyma12g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWIKAMGSTSSYVSSSSSSSKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGKAFGLLAGLASDRFPTWAILLIGSVEGLIGYGAQWLVVSQRIQPLPYWQLCVFLCMGGNSTTWMNTAVLVTCIRNFRSNRGPVSGILKGFVGLSTAIFTTLCSALFADDPGSFLIMLSVIPFAVCLTGVFFLRETPPDVSAGDDDGEEVKYFGFFNVVAVAVALFLLAYGFIPSPSMLVSRLFVAVLVVMLASPLGIPVYSYLKGRLGGGNDVERQRLKEPLLQIPEKENEGVVAEEEAEIVKRAPEVGEEHTIVEALRSVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDISLFLSLTSIFGFFGRIISGTVSEFTIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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