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Report for Sequence Feature Glyma12g03460

Feature Type:gene_model
Chromosome:Gm12
Start:2279734
stop:2280796
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36040AT Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr4:17049708-17050193 REVERSE LENGTH=161 SoyBaseE_val: 1.00E-30ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF170Panther JGI ISS
PF00226PFAM DnaJ domain JGI ISS
UniRef100_C6TF68UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TF68_SOYBN SoyBaseE_val: 2.00E-69ISS
UniRef100_H6VUT8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein (Fragment) n=1 Tax=Ammopiptanthus mongolicus RepID=H6VUT8_9FABA SoyBaseE_val: 4.00E-47ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03460 not represented in the dataset

Glyma12g03460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g11280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g030700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g03460.1   sequence type=CDS   gene model=Glyma12g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTCTATGACGTGCTTGGAATTTCAGTGGGTGCAAGCTGCATCGAAATAAAGGCTGCTTACAGAAAGCTGGCAAGAACACACCATCCTGATGTTGTGGCCATGGATCAGAAGGAAAGCTCAGCGAACCAATTCATGATGATCCATTCAGCTTACTCAACTTTGTCTGACCCAGAGAAGCGAGCACAATATGATAGAGAAATCTATAGATACAGAAGATCAGCAAATATAGCAGGAAGAAATCAGACATTTTCCTATGCTGGAAGTGGAAGGAAATGGGAAACAGACCAATGTTGGTAA

>Glyma12g03460.1   sequence type=predicted peptide   gene model=Glyma12g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLYDVLGISVGASCIEIKAAYRKLARTHHPDVVAMDQKESSANQFMMIHSAYSTLSDPEKRAQYDREIYRYRRSANIAGRNQTFSYAGSGRKWETDQCW*







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