SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16640 | AT | Annotation by Michelle Graham. TAIR10: multimeric translocon complex in the outer envelope membrane 132 | chr2:7211489-7215109 REVERSE LENGTH=1206 | SoyBase | E_val: 0 | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004888 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane signaling receptor activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| PTHR10903 | Panther | AIG1 | JGI | ISS | |
| PTHR10903:SF23 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04548 | PFAM | AIG1 family | JGI | ISS | |
| PF11886 | PFAM | Domain of unknown function (DUF3406) | JGI | ISS | |
| UniRef100_G7IKY4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translocase of chloroplast n=1 Tax=Medicago truncatula RepID=G7IKY4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D5E3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D5E3 related cluster n=1 Tax=unknown RepID=UPI000233D5E3 | SoyBase | E_val: 0 | ISS |
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Glyma12g03431 not represented in the dataset |
Glyma12g03431 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g11250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g030400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03431.1 sequence type=CDS gene model=Glyma12g03431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTATGAGGCTGATAAATTTGGTGCCAATGGAGAGGGAGAGAGTAAGAGAGTGGGTGAAGTGGTTTCTGAGGAGAGTGTAGCTGGGTCTGATCAAACGAAGGGTTTAGAAGCAGAGTATGTTTTTCAGGAGGCAATGGAGCCACGGGAGCAGGTCCATGATCAGGGATCCAAACTCAATTCGGAGGATGCGGTAGTTGATGAACAAGACGATACTGAAACCGGTAGTGCATTGACTTCTGCTTTGGCGGATGGAAATACTCCAGATGCCGTGCAGGAGCCCGATTCCTTTGAGCAGGCTGTTGGAGCTGATACTGACTCTGGGAAGCTCGGGGAAGATGAAGTAATTGCTAAGCAGGACTTGGAGGAAAGGGATGGGCAGGGAAATGATTATGTTCCTTTGGATGGTGTTGACTCTGGAGTGCCTGGAGATGGAGAAATTTGTGATGAGTCCTGTGGTGTGGGGGATGATAATCTGGAGAGTAGTGATGGGGGTGATGGAAAGGAAGAATCTGGGTTAAATTCTGACAGAGAGATGTTAGTTCTGGAGAATGGTTCTATGGTGGATGGAAATTCTGGTTTGGTGAGTGAGAAGGCTGAAATTGATGATTCTGAATTCATGACTCCTAGAGAGAATGGTGGTATAGTGTTGGACAATGGAAGCACAGATGAGGTGGATGGTGTTGCTACTGAGGCTATTATGAAATCTGAATCCAGTGAGGTCATTCCAGCCCAAGGTACTGATGCTGGGGATTTGAAGGAGTGTGCCCCAGATCCTGAACTTGGAGATGACAAGATAGAGGTAAAGTTAAATGCTTCAGTTGATCCTTCTGGTGAGATTCAAGATGATACATCTGAAGAAGTACACGGCAATTCAGCTCACATGACTTTAGAACATCAAGATGAAGTAACTAGGGATATGAAGGATGATTCTCTGGGCACTAATATGAGTCACAAAGACAGAAATGGTGAAGAAATGAGTACTGATGGCATTCAAAATACTGAAATAAGAGATTGTGGGAATGGCTATGCTGAAGCTGGAAGCTCACCACCCTTTTTGGAAAATTCCTCTAATCAGCCACTGTCTGTTCAGGAGGCTAGTGCAGCTGAACCAAAGGAAGCTAGTAATAAGGATGATCAATCTCAGATTTCTGATGAAGAGCATAGAGATCATGACAACACTTCTGTGGTTGAGGAGCCTGAAAGCATACAGGAGAAGATTATTCAAGTGACTGGAGAGCAACATGTTCAACCTGCAGCAGATATTTCTTCTTCATCTGAAAGGTCTGCCGGTACTGTGCCTACTCCTGTCCGTCCTTCATCTGAAAATTCTGCTGCCGCTGGGCCCACTCCTGTTCATCCAACTGGCCTTGGTCGTGCAGCTCCATTACTGGAACCTGCATCTCGGGTAGTGCAGCAACCTCGTGCTAATGGTACTGTATCTAATAGTCAGTCCCAGCAAATGGAGGACTCCTCGAGTGGGGAGGCTGAGGAGTATGATGAGACACGTGAGAAACTTCAGATGATTAGGGTGAAGTTTTTACGGTTGGCTCATAGGCTTGGGCAAACTCCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGATTAGGATTGGCTGAGCAACTCAGAGGAAGGAATGGGGGGCGTGTTGGTGCTTTTAGCTTTGATCGTGCAAGTGCAATGGCTGAGCAGCTCGAAGCAGCAGGTCAGGAGCCACTTGATTTCTCTTGTACAATAATGGTCCTTGGAAAGACGGGAGTTGGTAAAAGTGCTACCATCAATTCTATTTTTGATGAGGTTAAGTTTAATACCAGTGCTTTTCATATGGGAACCAAGAAGGTTCAGGATGTTGTGGGAACAGTGCAGGGCATTAAGGTACGGGTCATTGATACACCGGGACTTCTACCTTCCTGGGCTGACCAGCGAAGCAATGAGAAGATCCTCCAGTCTGTTAAGCACTTTATTAAGAAAACTCCACCTGATATTGTGTTGTATCTTGATAGGTTAGACATGCAGAGCAGGGATTTTAGTGATATGCCACTCTTGCGCACAATTACTGAAATTTTTGGGCCATCCATTTGGTTCAATGCCATTGTGGTTCTGACTCATGCTGCATCTGCTCCTCCTGAAGGCCCTAATGGTACTGCTTCCAGTTATGACACGTTTTTTACTCAACGTTCTCATGTTGTGCAGCAAGCCATTCGACAAGCAGCTGGTGACATGCGTCTCATGAATCCTGTATCCTTGGTGGAGAACCATTCTGCTTGCAGAACAAATAGGGCTGGTCAGAGAGTATTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTACTTCTATCTTTTGCCTCTAAAATTCTGGCTGAAGCCAATGCTCTTCTCAAGTTACAAGATAGTCCACCTGGGAAGCCATATGTAGCTCGAGCAAGAGCGCCTCCATTACCTTTTCTTTTGTCAACCCTTCTCCAATCAAGACCGCAATTAAAGTTGCCAGAGGAGCAGTTTGGTGATGAGGACAGTCTTGATGATGACCTTGATGAATCATCAGAGTCTGATGATGAAAATGAACATGACGACTTGCCGCCATTTAAACCTTTAACTAAGGCCCAGGTGGAAAAGCTGTCTAAAGCTCATAAGAAAGCATATTTTGATGAGTTGGAGTATAGAGAGAAGCTTTTGATGAAGAAGCAATTGAAGGAAGAAAAAAAGCGACGGAAAATGTTGAAGAAAATGGCAGAATCAGCAAAAGATCTACCAAGTGACCATAGTGAAAATGTGGAAGAAGAAAGTGGTGGTGCAGCTTCTGTTCCTGTTCCCATGCCAGATTTGGCCCTGCCTGCTTCTTTTGATTCTGATAACCCCACTCACCGGTATCGTTATCTTGATTCGTCATCAAATCAGTGGCTTGTAAGACCTGTTTTAGAAACTCACGGATGGGATCATGATGTGGGTTATGAAGGGTTGAATGTAGAGAGATTGTTCGTTCTCAAGGAAAAGATACCTTTATCTTTCTCTGGTCAGGTTACTAAAGATAAAAAGGATGCTAATGTTCAGATGGAAATATCCAGTTCAGTTAAGCATGGGAAAGGGAAAGCAACTTCATTAGGTTTTGATTTGCAAACTGTGGGGAAGGACTTGGCTTATACATTACGCAGTGAGACAAGATTTACTAATTTTAGAAGAAATAATGCAACCGCTGGTCTCTCATTTACTTTACTTGGTGATGCCTTATCATCTGGATTGAAGATTGAAGACAAATTGGTTGCTAGTAAGCGATTCAAGCTGGTTGTCAGTGGTGGCGCAATGACAGGGCGTGGCGACATTGCTTATGGTGGCAGTTTGGAGGCCCAACTGAGAGATAAGGATTACCCTCTTGGTCGTTTCTTAACCACACTTGGCCTTTCTGTTATGGATTGGCATGGAGATCTTGCTGTTGGGTACAATGTGCAATCTCAGATCCCAGTAGGACGTTATACAAACCTTGTTGCCCGGGCCAATTTGAACAATCGAGGGGCCGGACAAATAAGTATTCGATTAAATAGTTCAGAACAGCTTCAAATTGCTTTGATTGGTCTCATCCCTCTCCTAAAGAAGCTAGTTGGTTATCATCAACAATTGCAGTTTGGACAATACTGA
>Glyma12g03431.1 sequence type=predicted peptide gene model=Glyma12g03431 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDYEADKFGANGEGESKRVGEVVSEESVAGSDQTKGLEAEYVFQEAMEPREQVHDQGSKLNSEDAVVDEQDDTETGSALTSALADGNTPDAVQEPDSFEQAVGADTDSGKLGEDEVIAKQDLEERDGQGNDYVPLDGVDSGVPGDGEICDESCGVGDDNLESSDGGDGKEESGLNSDREMLVLENGSMVDGNSGLVSEKAEIDDSEFMTPRENGGIVLDNGSTDEVDGVATEAIMKSESSEVIPAQGTDAGDLKECAPDPELGDDKIEVKLNASVDPSGEIQDDTSEEVHGNSAHMTLEHQDEVTRDMKDDSLGTNMSHKDRNGEEMSTDGIQNTEIRDCGNGYAEAGSSPPFLENSSNQPLSVQEASAAEPKEASNKDDQSQISDEEHRDHDNTSVVEEPESIQEKIIQVTGEQHVQPAADISSSSERSAGTVPTPVRPSSENSAAAGPTPVHPTGLGRAAPLLEPASRVVQQPRANGTVSNSQSQQMEDSSSGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFNTSAFHMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWADQRSNEKILQSVKHFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTASSYDTFFTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPYVARARAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSLDDDLDESSESDDENEHDDLPPFKPLTKAQVEKLSKAHKKAYFDELEYREKLLMKKQLKEEKKRRKMLKKMAESAKDLPSDHSENVEEESGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSSNQWLVRPVLETHGWDHDVGYEGLNVERLFVLKEKIPLSFSGQVTKDKKDANVQMEISSSVKHGKGKATSLGFDLQTVGKDLAYTLRSETRFTNFRRNNATAGLSFTLLGDALSSGLKIEDKLVASKRFKLVVSGGAMTGRGDIAYGGSLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAVGYNVQSQIPVGRYTNLVARANLNNRGAGQISIRLNSSEQLQIALIGLIPLLKKLVGYHQQLQFGQY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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