SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G21120 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF803) | chr2:9052103-9054266 REVERSE LENGTH=328 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009625 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to insect | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| KOG2922 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12570 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF05653 | PFAM | Protein of unknown function (DUF803) | JGI | ISS | |
| UniRef100_B9SQJ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative n=1 Tax=Ricinus communis RepID=B9SQJ1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LPM9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPM9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03390 not represented in the dataset |
Glyma12g03390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g030100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03390.2 sequence type=transcript gene model=Glyma12g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGACCAACACCTGTGCAGCAATTCTCTGTCACCAAATTTGATCTTTCTTTCTTTCTTTCTTTGGCGGGAATGACAGAAACGGGGGTTTCTGATAATTTCAAGGGCTTAATACTGGCGATGGGTTCTAGTGCATTCATCGGTTCCAGTTTCATCTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGTGACAATGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCATGCACCACAAGAGCAAACTCCGAGTTCTGTCCAAGAAATATGGGATCTGGCCACTCAACCAGTTTCGGTAGTTTTGGCCTTGATCGTACACTTTGAACCTCGCTATGGACAGACTAATATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACGGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCACAATCTGTGTCATTACGCAGTTGAATTACCTTAATAGGGCTCTGGATACATTCAATGCCACAATTGTTTCTCCTGTATATTATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAAAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATGAACACCTGATCCGTATACATGATTCAGATTACCTCGAACGTTGAATTTTCCTTGGAGGTTAGGTTGATGTTCGAGAACATTTTCCATCTGTGCTGATACAATGGCGTGAGCCTGCCCATGGTCACATGATGTTTTGCAGTGTGGATTGCTTGTCCTTGAGCTTAATGAATTCAAGCATCCATGGTGCTATAGCTTTCTAACCATTTCTCCGCATGCTATTTGCATGCAGCTGTTGACTGGAGCCATCTCAGATTTCAAACGGAAATGAGATTGCTGTCTCATTACAACAAATGGAATTTTTGGAGCGATCTTATGCCCTGTTCTATTGTCCATCTTAGCCAGTGTAACTTTTCTTAACACACACACACACGTATCTTTTGGTAGGAAGTGAGCAATTGTTTATACAGTTCCGTCTGTATTTCTCATTTAATTAACTATTAGATTTATAGTTTATTTTCTTGAAATAGGTAAATGATAGATCCGTTGACTTCCGCGGAAAATGTTGAGGATATTTATTCTCCGATCTTCTGCAGTAAAAAGTGAATTATTATCTATTTTTTTATCCTCCAGACCTGAGGATATTAGCAAGCAAAGATGACTTGATACAGTTATTCGCATCAAAGAACCTGCTAGTGGAGTAGTGGTAGCGAGTTTAGCGTACTTTTGCATGGCATCTATCTTTGTTCTATCCTCATTCATTCCTCACTTATTTATAATACAATTCGTTAAATTGTTGCTTCGATTCGAAGCG
>Glyma12g03390.1 sequence type=CDS gene model=Glyma12g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGAAACGGGGGTTTCTGATAATTTCAAGGGCTTAATACTGGCGATGGGTTCTAGTGCATTCATCGGTTCCAGTTTCATCTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGTGACAATGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCATGCACCACAAGAGCAAACTCCGAGTTCTGTCCAAGAAATATGGGATCTGGCCACTCAACCAGCATTTCTGTTTTATGTGATGGCAACAGTTTCGGTAGTTTTGGCCTTGATCGTACACTTTGAACCTCGCTATGGACAGACTAATATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACGGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCACAATCTGTGTCATTACGCAGTTGAATTACCTTAATAGGGCTCTGGATACATTCAATGCCACAATTGTTTCTCCTGTATATTATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAAAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATGAACACCTGATCCGTATACATGATTCAGATTACCTCGAACGTTGA >Glyma12g03390.2 sequence type=CDS gene model=Glyma12g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGAAACGGGGGTTTCTGATAATTTCAAGGGCTTAATACTGGCGATGGGTTCTAGTGCATTCATCGGTTCCAGTTTCATCTTGAAGAAGAAGGGTCTTAAGCGTGCTGCTGCACGCGGTACTCGTGCAGGAGTTGGTGGCTATACTTATCTACTAGAGCCGCTTTGGTGGGCTGGCATGGTGACAATGATTATTGGGGAGATTGCAAACTTTGTTGCTTATATCTATGCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCATGCACCACAAGAGCAAACTCCGAGTTCTGTCCAAGAAATATGGGATCTGGCCACTCAACCAGTTTCGGTAGTTTTGGCCTTGATCGTACACTTTGAACCTCGCTATGGACAGACTAATATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACGGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCACAATCTGTGTCATTACGCAGTTGAATTACCTTAATAGGGCTCTGGATACATTCAATGCCACAATTGTTTCTCCTGTATATTATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAAAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATGAACACCTGATCCGTATACATGATTCAGATTACCTCGAACGTTGA
>Glyma12g03390.1 sequence type=predicted peptide gene model=Glyma12g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTETGVSDNFKGLILAMGSSAFIGSSFILKKKGLKRAAARGTRAGVGGYTYLLEPLWWAGMVTMIIGEIANFVAYIYAPAVLVTPLGALSIIVSAVLSHFLLKERLPKMGVLGCVSCIVGSIVIVIHAPQEQTPSSVQEIWDLATQPAFLFYVMATVSVVLALIVHFEPRYGQTNMLVYLGICSLVGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVATICVITQLNYLNRALDTFNATIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSSIASEICGFITVLTGTIILHMTREQEESNMQKTSTWFIGEDLMKGVENEHLIRIHDSDYLER* >Glyma12g03390.2 sequence type=predicted peptide gene model=Glyma12g03390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTETGVSDNFKGLILAMGSSAFIGSSFILKKKGLKRAAARGTRAGVGGYTYLLEPLWWAGMVTMIIGEIANFVAYIYAPAVLVTPLGALSIIVSAVLSHFLLKERLPKMGVLGCVSCIVGSIVIVIHAPQEQTPSSVQEIWDLATQPVSVVLALIVHFEPRYGQTNMLVYLGICSLVGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVATICVITQLNYLNRALDTFNATIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSSIASEICGFITVLTGTIILHMTREQEESNMQKTSTWFIGEDLMKGVENEHLIRIHDSDYLER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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