SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50300 | AT | Annotation by Michelle Graham. TAIR10: TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372 | SoyBase | E_val: 1.00E-137 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1995 | KOG | Conserved Zn-finger protein | JGI | ISS | |
| PTHR12999 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12999:SF1 | Panther | ZINC FINGER PROTEIN 265 (ZINC FINGER, SPLICING) | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00641 | PFAM | Zn-finger in Ran binding protein and others | JGI | ISS | |
| UniRef100_B9S3N2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3N2_RICCO | SoyBase | E_val: 3.00E-150 | ISS |
| UniRef100_C6TM21 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TM21_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03260 not represented in the dataset |
Glyma12g03260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g11060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g028800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03260.3 sequence type=transcript gene model=Glyma12g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTTAAGTTTACATATGATTAATCAAAATTCAATTTTACATAGTTTTCGTCATTCAAAATCAAGAGCTGCTATCCGACCCGTATTGTTGTGGAAAAAAAAAATGGTGAGAGGAAAAAAAAAAAGGTATAAGGATTGACATTGGAGAAGAGGAAGAGAAACAGTGCAGAGAGTGTAGAGGGAGTGAAAGGAGAAGCGATAAATCACAGATCTAACCAACAACACAACAACTGCAGTTTTTTTCAGATATCAACCTCCTCCGATTTTGGAGCTCTGGTGGTTCTGATTGCTTCTGTTTCATGAGATTAAGGCCCCATGGCAAGCCATCCTGGAAATCATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATAACATGCTGGCTGAATATTTCGGTACCATCGGATTAATAAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAAACTAATGAACCAAAAGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAGCATATAATGCAGCAGTTGAACCGGGAGTTACTGATAATGTTGGTGGACTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAAATGATACTTCAGGCAAAGCATGGCAACAAGATGGTGATTGGTTGTGTCTGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCACAAGAATCAGGGGGTATTGGCCGGCCAGCTGGTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAACACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATAGATAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAGTTGGAATAGGGAGAGGGGAAGAGATCGAGATTGGGATTATGTTGATCGAGATAGAGATTATGGGAGAGATCGGGACCGAAGTAGACACCGTTACTAAAATTAGCAGCAAGAGTGCATTCTGATGTGTTGACTACCATGCTGTGTGGGCCTTTTGTAGAAGAATTTCAATTGCTTTGAATTCAATCCGTAAGTTTGGGGGGTCAACTTCCTGCAATCTGATCATGGACCTTTTGTACAACCTATGGTATTTATGTTTTTTCTATTCACAAAGACAAGTTTTTGTTTGAGAACGTCACAATAGTTTGAACTATTAGTTGTCGTCAGCTAATTTCTTGTGTTGCTTGAATGGAGTAATTACTAGAGCGCGAATGATAGTATTACAAGACGATGATGATCTTGAAGGCTGACAATTTTTCCTGTTGCAATTTGCTAATTAGTGTTTGTTGCTTGTTCGAGTTTTGATCGTCATTTGACTTGTTACTCGGTCATAGATGCTTTGGGCGAACTAGTATTACAAGAATACAGTGACATAACTTGTTGGAGGTAAAGACGCCAGAGAGCAATCAGCATGCAGAACATGAATTAACCCATTCGGGGTTGAGAACACTTGTGTAAGTTTATTAAATGATAAATTTGTCCTATTTGAGACACTTTATTGTAAACTAATCTTAAAAAAATCGTAAATATTATATTAGACCCTTTTTAGTCTTCTAACTTTGG
>Glyma12g03260.2 sequence type=CDS gene model=Glyma12g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGCCATCCTGGAAATCATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATAACATGCTGGCTGAATATTTCGGTACCATCGGATTAATAAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAAACTAATGAACCAAAAGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAGCATATAATGCAGCAGTTGAACCGGGAGTTACTGATAATGTTGGTGGACTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAAATGATACTTCAGGCAAAGCATGGCAACAAGATGGTGATTGGTTGTGTCTGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCACAAGAATCAGGGGGTATTGGCCGGCCAGCTGGTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAACACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATAGATAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAGTTGGAATAGGGAGAGGGGAAGAGATCGAGATTGGGATTATGTTGATCGAGATAGAGATTATGGGAGAGATCGGGACCGAAGTAGACACCGTTACTAA >Glyma12g03260.3 sequence type=CDS gene model=Glyma12g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGCCATCCTGGAAATCATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGATAACATGCTGGCTGAATATTTCGGTACCATCGGATTAATAAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAAACTAATGAACCAAAAGGAGATGCTACTGTAACATATGAGGATCCGCATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAATACAATTGGAGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAGCATATAATGCAGCAGTTGAACCGGGAGTTACTGATAATGTTGGTGGACTAGAGGAAACTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAAATGATACTTCAGGCAAAGCATGGCAACAAGATGGTGATTGGTTGTGTCTGAATACAAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTTCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCACAAGAATCAGGGGGTATTGGCCGGCCAGCTGGTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGGAATATCAATTGGGCAAAGCGGACTAAATGCAATATCTGCAACACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATAGATAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATGATGGGGAGAGCAGGAACAGAGAGCGAAGCGAAAAAGAGAGGCCTAGCAGTTGGAATAGGGAGAGGGGAAGAGATCGAGATTGGGATTATGTTGATCGAGATAGAGATTATGGGAGAGATCGGGACCGAAGTAGACACCGTTACTAA
>Glyma12g03260.2 sequence type=predicted peptide gene model=Glyma12g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASHPGNHAPSNGSVYVCNLPYGTDDNMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVFIAESKNKDDQAYNAAVEPGVTDNVGGLEETTKDVNGGSGRGRGQNDTSGKAWQQDGDWLCLNTSCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGRAAQESGGIGRPAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGIDRDARESRDRGRERNDGESRNRERSEKERPSSWNRERGRDRDWDYVDRDRDYGRDRDRSRHRY* >Glyma12g03260.3 sequence type=predicted peptide gene model=Glyma12g03260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASHPGNHAPSNGSVYVCNLPYGTDDNMLAEYFGTIGLIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGNTIGVFIAESKNKDDQAYNAAVEPGVTDNVGGLEETTKDVNGGSGRGRGQNDTSGKAWQQDGDWLCLNTSCSNVNFAFRGACNRCGTARPAGASGISGAGGRGKGRAAQESGGIGRPAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGLPGSGRAGWEVEELGIDRDARESRDRGRERNDGESRNRERSEKERPSSWNRERGRDRDWDYVDRDRDYGRDRDRSRHRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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