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A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G18630 | AT | Annotation by Michelle Graham. TAIR10: uracil dna glycosylase | chr3:6411325-6413002 REVERSE LENGTH=330 | SoyBase | E_val: 2.00E-150 | ISS |
GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0004844 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: uracil DNA N-glycosylase activity | SoyBase | N/A | ISS |
KOG2994 | KOG | Uracil DNA glycosylase | JGI | ISS | |
PTHR11264 | Panther | URACIL DNA GLYCOSYLASE | JGI | ISS | |
PF03167 | PFAM | Uracil DNA glycosylase superfamily | JGI | ISS | |
UniRef100_I1LPL1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Uracil-DNA glycosylase n=1 Tax=Glycine max RepID=I1LPL1_SOYBN | SoyBase | E_val: 0 | ISS |
UniRef100_UPI000233C168 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C168 related cluster n=1 Tax=unknown RepID=UPI000233C168 | SoyBase | E_val: 0 | ISS |
Glyma12g03220 not represented in the dataset |
Glyma12g03220 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g028400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03220.2 sequence type=transcript gene model=Glyma12g03220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGCAAATTAAATTAGCTTGAACTTGAATGATTTTTTTATCACGTGCTTCGCCGTATAAATATCACTTCAGCTGAAAAGGGGGGAAAAGAACACAATACATTCATCCTTGTGTTTCCGTTCCCGCCATTGCAAAGGGAAAAAAATGGCTTCTGCGCCATCGAGAACCCTAACGGACTTTTTCCAACCCGCTTCGAAGCGCTTGAAGCCCACTCTCCCCGCATCATGCAAATCCGACGACGCCAATGCTTCCACGCTCTCCGTCGATCAGAAGTTGCGCATGGAATACAACAAGCTCCTCGCCAAGTCCAAGAGGAATCTCAAACTCTGCGTCGAGAGGGTCTCCAAAAGCAAAGAATCAGGTTTAGGTGGCGTGAAGCTGGAAGAGCTGCTGGTGGAAGAAACGTGGTTGGAAGCTCTACCTGGTGAACTCCAAAAACCCTATGCCCTCACTCTCTCCAAATTCGTTGAAAGTGAGATTTCGGGCGGAGACGGCGTCATTTTCCCTCCGACGCACTTGATTTTCAACGCTCTTAACTCCACGCCTTTTCATACAGTGAAAGCTGTTATCCTTGGCCAGGACCCTTATCATGGTCCTGGTCAAGCAATGGGGCTTTCATTCTCGGTTCCCGAGGGAATCAAAGTCCCTTCCAGTTTGGTAAATATATTTAAGGAACTTCACCAAGACCTTGGCTGCTCCATTCCAACTCATGGAAATCTTCAAAAATGGGCTGTGCAGGGTGTTCTCTTGCTGAATGCTGTTCTCACAGTCAGGAAGCATCAAGCAAATTCTCATGCCAAAAAAGGCTGGGAACAATTTACTGATGTTGTTATCAAGACCATCTCACAGAAGAAGGAAGGAGTTGTGTTTCTGTTGTGGGGAAACTCTGCTCGGGAAAAATCTAGGTTAATTGATGCAAGAAAGCATCATGTTCTTACTGCTGCACATCCTTCTGGTTTGTCTGCAAATAGAGGCTTCTTTGGCTGCAGGCACTTTTCTCGCACTAACCAACTTCTGGAGCAAATGGGGATTGATCCAATAGATTGGCAACTATAATTATTACCTATAGTTTCAAGCTTCCTTTTTCCCTTTGATTAGGATTATCTTTGAAGCCTACTGCTGTAAGTTTGCGGAGCTTCTGAAGTCCAATTTCCTTAATGTGTAGATGATTCTGTCGATTTCAAATCTACCTAGAAAAGATGCTTTTTGTCGATAGTTTGCTCCTGCAGTGTTGCTACCTTGGAGATTCTGCTGTAATGCGTAATGACCATTACTATATAGGATTTTGGCTTAACTATATTCTTGGACACTAATTTCGTGTATTATCTATGTGCTGTCTTATTATTAACGAACAACACATGTTAAGATGGAAATTCTCAAAAGGACCAACTCGACTACTTTTAATCCTAGGTTGAGATCGTAGCAACTAAACATGAGGAAAGTTAACTTTTTATTTCTTTCAGATAAAGGTCACTCAATATGATACGTGTGTTTGTTTGTGGAGACAAGATTTGAATAAAGTATTGGTTTCTTTGTTCTAAAATGACTGTAATATTAATTTTG
>Glyma12g03220.1 sequence type=CDS gene model=Glyma12g03220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTGCGCCATCGAGAACCCTAACGGACTTTTTCCAACCCGCTTCGAAGCGCTTGAAGCCCACTCTCCCCGCATCATGCAAATCCGACGACGCCAATGCTTCCACGCTCTCCGTCGATCAGAAGTTGCGCATGGAATACAACAAGCTCCTCGCCAAGTCCAAGAGGAATCTCAAACTCTGCGTCGAGAGGGTCTCCAAAAGCAAAGGTTTAGGTGGCGTGAAGCTGGAAGAGCTGCTGGTGGAAGAAACGTGGTTGGAAGCTCTACCTGGTGAACTCCAAAAACCCTATGCCCTCACTCTCTCCAAATTCGTTGAAAGTGAGATTTCGGGCGGAGACGGCGTCATTTTCCCTCCGACGCACTTGATTTTCAACGCTCTTAACTCCACGCCTTTTCATACAGTGAAAGCTGTTATCCTTGGCCAGGACCCTTATCATGGTCCTGGTCAAGCAATGGGGCTTTCATTCTCGGTTCCCGAGGGAATCAAAGTCCCTTCCAGTTTGGTAAATATATTTAAGGAACTTCACCAAGACCTTGGCTGCTCCATTCCAACTCATGGAAATCTTCAAAAATGGGCTGTGCAGGGTGTTCTCTTGCTGAATGCTGTTCTCACAGTCAGGAAGCATCAAGCAAATTCTCATGCCAAAAAAGGCTGGGAACAATTTACTGATGTTGTTATCAAGACCATCTCACAGAAGAAGGAAGGAGTTGTGTTTCTGTTGTGGGGAAACTCTGCTCGGGAAAAATCTAGGTTAATTGATGCAAGAAAGCATCATGTTCTTACTGCTGCACATCCTTCTGGTTTGTCTGCAAATAGAGGCTTCTTTGGCTGCAGGCACTTTTCTCGCACTAACCAACTTCTGGAGCAAATGGGGATTGATCCAATAGATTGGCAACTATAA >Glyma12g03220.2 sequence type=CDS gene model=Glyma12g03220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTGCGCCATCGAGAACCCTAACGGACTTTTTCCAACCCGCTTCGAAGCGCTTGAAGCCCACTCTCCCCGCATCATGCAAATCCGACGACGCCAATGCTTCCACGCTCTCCGTCGATCAGAAGTTGCGCATGGAATACAACAAGCTCCTCGCCAAGTCCAAGAGGAATCTCAAACTCTGCGTCGAGAGGGTCTCCAAAAGCAAAGAATCAGGTTTAGGTGGCGTGAAGCTGGAAGAGCTGCTGGTGGAAGAAACGTGGTTGGAAGCTCTACCTGGTGAACTCCAAAAACCCTATGCCCTCACTCTCTCCAAATTCGTTGAAAGTGAGATTTCGGGCGGAGACGGCGTCATTTTCCCTCCGACGCACTTGATTTTCAACGCTCTTAACTCCACGCCTTTTCATACAGTGAAAGCTGTTATCCTTGGCCAGGACCCTTATCATGGTCCTGGTCAAGCAATGGGGCTTTCATTCTCGGTTCCCGAGGGAATCAAAGTCCCTTCCAGTTTGGTAAATATATTTAAGGAACTTCACCAAGACCTTGGCTGCTCCATTCCAACTCATGGAAATCTTCAAAAATGGGCTGTGCAGGGTGTTCTCTTGCTGAATGCTGTTCTCACAGTCAGGAAGCATCAAGCAAATTCTCATGCCAAAAAAGGCTGGGAACAATTTACTGATGTTGTTATCAAGACCATCTCACAGAAGAAGGAAGGAGTTGTGTTTCTGTTGTGGGGAAACTCTGCTCGGGAAAAATCTAGGTTAATTGATGCAAGAAAGCATCATGTTCTTACTGCTGCACATCCTTCTGGTTTGTCTGCAAATAGAGGCTTCTTTGGCTGCAGGCACTTTTCTCGCACTAACCAACTTCTGGAGCAAATGGGGATTGATCCAATAGATTGGCAACTATAA
>Glyma12g03220.1 sequence type=predicted peptide gene model=Glyma12g03220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASAPSRTLTDFFQPASKRLKPTLPASCKSDDANASTLSVDQKLRMEYNKLLAKSKRNLKLCVERVSKSKGLGGVKLEELLVEETWLEALPGELQKPYALTLSKFVESEISGGDGVIFPPTHLIFNALNSTPFHTVKAVILGQDPYHGPGQAMGLSFSVPEGIKVPSSLVNIFKELHQDLGCSIPTHGNLQKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDVVIKTISQKKEGVVFLLWGNSAREKSRLIDARKHHVLTAAHPSGLSANRGFFGCRHFSRTNQLLEQMGIDPIDWQL* >Glyma12g03220.2 sequence type=predicted peptide gene model=Glyma12g03220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASAPSRTLTDFFQPASKRLKPTLPASCKSDDANASTLSVDQKLRMEYNKLLAKSKRNLKLCVERVSKSKESGLGGVKLEELLVEETWLEALPGELQKPYALTLSKFVESEISGGDGVIFPPTHLIFNALNSTPFHTVKAVILGQDPYHGPGQAMGLSFSVPEGIKVPSSLVNIFKELHQDLGCSIPTHGNLQKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDVVIKTISQKKEGVVFLLWGNSAREKSRLIDARKHHVLTAAHPSGLSANRGFFGCRHFSRTNQLLEQMGIDPIDWQL*
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