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Report for Sequence Feature Glyma12g03210

Feature Type:gene_model
Chromosome:Gm12
Start:2106354
stop:2110023
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g03210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G19820AT Annotation by Michelle Graham. TAIR10: cell elongation protein / DWARF1 / DIMINUTO (DIM) | chr3:6879835-6881616 REVERSE LENGTH=561 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0006694GO-bp Annotation by Michelle Graham. GO Biological Process: steroid biosynthetic process SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009653GO-bp Annotation by Michelle Graham. GO Biological Process: anatomical structure morphogenesis SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009808GO-bp Annotation by Michelle Graham. GO Biological Process: lignin metabolic process SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0009834GO-bp Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0048869GO-bp Annotation by Michelle Graham. GO Biological Process: cellular developmental process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
KOG1262 KOG FAD-binding protein DIMINUTO JGI ISS
PTHR10801Panther CELL ELONGATION PROTEIN DIMINUTO-RELATED JGI ISS
PF01565PFAM FAD binding domain JGI ISS
UniRef100_I1LPL0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPL0_SOYBN SoyBaseE_val: 0ISS
UniRef100_P93472UniRef Annotation by Michelle Graham. Most informative UniRef hit: Delta(24)-sterol reductase n=1 Tax=Pisum sativum RepID=DIM_PEA SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g03210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03210 not represented in the dataset
Glyma12g03210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g03210
ParalogEvidenceComments
Glyma11g11020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g03210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g028300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g03210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g03210
>Glyma12g03210.4   sequence type=transcript   gene model=Glyma12g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACAATCGTAAGCTGAAAGGATTTAGTTGTAATTTGGCTAACACGGTGTTGTGTTCTGAAGTGTAGAGAAGAGAGGCTTAAAACCCCAGCAGAGTCCTCGCATTTCACTCTCACTCTCACTCTCACTCTCTCAGCTCAGGAGTGTATAATCTGAGCGATGTCAGATCTTGAGGCTCCCTTGCGCCCTAAGAGGAAGAAGGTTTGGGTGGACTATTTCGTTCAGTTTCGATGGATCCTTGTTATTTTTGTGGTCCTTCCCATCTCCTTCACCATTTATTTCCTTACATACCTTGGGGATGTAAGATCTGAGTGGAAGTCCTATAAGACGCGTCAGAAGGAACATGATGAGAATGTGAAGAAGGTTATCAAACGTCTCAAACAGAGGAATCCATCAAAAGATGGTCTTGTCTGTACCGCTCGTAAGCCCTGGATTGCTGTTGGGATGCGGAACGTTGACTATAAGAGAGCCCGTCATTTTGAAGTTGATTTGTCTGCTTTCCGGAATGTACTTGAGATCGACAAAGAACGGATGATTGCAAGAGTTGAGCCCCTAGTCAACATGGGTCAGATCAGCAGGGTGACTGTACCCATGAATCTTTCCCTTGCTGTAGTTGCAGAGCTTGATGATCTAACTGTCGGTGGTCTCATTAACGGCTATGGTATAGAAGGAAGCTCCCACAAATATGGTTTGTTCGCTGATACTGTTGTGGCCTATGAAATTATTTTGGCTGATGGCACTCTTGTGAGAGCCACCAAGGACAATGAGTACTCTGATCTATACTATGCCATTCCGTGGTCTCAGGGAACACTCGGCCTTCTTGTTGCTGCTGAGATCAGGCTTATACCCGTTAAGGAGTACATGAAGCTAACCTATAAACCTGTTGTTGGCACCCTGCAAGATCTTGCTCAGGCATATTGTGATTCTTTTGCTCCCAGAGATGGAGACCAGGATAATGAGGAGAAGGTTCCAGACTTTGTTGAAGGAATGATTTATACACCAACAGAAGGTGTGATGATGACAGGAAGATATGCTTCAAAGGAAGAGGCCAAGAAGAAGGGGAATAAGATCAACAGTGTAGGATGGTGGTTTAAACCCTGGTTCTATCAGCATGCACAGACGGCACTGAAGAAAGGAGAGTTTGTAGAATACATTCCTACCAGAGAATATTATCACAGGCACACGAGATGCTTGTACTGGGAGGGAAAGCTTATCCTCCCATTTGCTGATCAATTTTGGTTTAGGTATCTGTTTGGCTGGTTGATGCCACCCAAGGTTTCTCTCCTCAAGGCAACTCAAGGTGATGCTATAAGAAACTATTACCATGAAATGCATGTCATCCAGGACATGCTTGTTCCTTTGTACAAGGTGGGAGATGCTTTAGAATGGGTTCACCGTGAGATGGAGGTATACCCCATTTGGCTCTGCCCACACAAATTGTTCAAGCTGCCTGTCAAAACTATGATTTACCCCGAGCCAGGATTCGAACTACACCGCAGGCAAGGAGACACCCAAACTGCTCAAATGTACACAGATGTTGGAGTTTATTATGCACCAGGTCCTGTTCTTAGGGGTGAGGTATTTGATGGGGCAGAAGCAGTGCGTAAAATGGAGAACTGGTTGATTGAAAATCATGGTTTTCAGCCACAGTATGCTGTGTCAGAGCTGTCCGAGAAAAACTTCTGGAGGATGTTTGATGCTGGTTTATATGAGCATACTAGGAGGAAGTATGGAGCTGTTGGGACCTTTATGAGTGTATACTACAAATCAAAGAAGGGCAGGAAAACTGAGAAGGAGGTACAAGAAGCAGAGCAAGCGCACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGTAGACTGATTTTGGATTTTGATTCATCTCATGGTAGTAGAATTTTATTGCATCTCGTTTCCCACATATGCAGGAGTTGATCAACGGGTAGACTGATTTTGAATTTTGATTCATCATATGATAGAATTTTATTGCATATTCATTCCGTATTTATCGTTTTGCCTTTTGTAATTTTGGATCTCTGGCTTCGGATAGCCTCAGTTGCTGATACTCTTTTGCCGTTTCCAATGTCTTTAATGAATTATGTGGACTTAACTTTTCAAGTGCTCAAGACTGAAATGGCTGTGTGCTCGAGTGTATCTTTAATTCTTAGGTACAAATAAAATGCATCTGCAGACGTGCAACGTCCTAATCAAATCCTTTCACGGGTTGTTGCTCGTACATATGTACATGATACATTGTGTATCCCAGTGACCTGGTCCTACCACATTTGGATCCTTGAAAATTTACATGGCTTGTAATTTAAACTATGTGATTCAGTCTAAAAATTACTTGAAACTCTATTCGTTAAAAATATGGTTGACATGAATGTGAAACAAGTTCGATTAATTC
Coding sequences of Glyma12g03210
>Glyma12g03210.3   sequence type=CDS   gene model=Glyma12g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATCTTGAGGCTCCCTTGCGCCCTAAGAGGAAGAAGGTTTGGGTGGACTATTTCGTTCAGTTTCGATGGATCCTTGTTATTTTTGTGGTCCTTCCCATCTCCTTCACCATTTATTTCCTTACATACCTTGGGGATGTAAGATCTGAGTGGAAGTCCTATAAGACGCGTCAGAAGGAACATGATGAGAATGTGAAGAAGGTTATCAAACGTCTCAAACAGAGGAATCCATCAAAAGATGGTCTTGTCTGTACCGCTCGTAAGCCCTGGATTGCTGTTGGGATGCGGAACGTTGACTATAAGAGAGCCCGTCATTTTGAAGTTGATTTGTCTGCTTTCCGGAATGTACTTGAGATCGACAAAGAACGGATGATTGCAAGAGTTGAGCCCCTAGTCAACATGGGTCAGATCAGCAGGGTGACTGTACCCATGAATCTTTCCCTTGCTGTAGTTGCAGAGCTTGATGATCTAACTGTCGGTGGTCTCATTAACGGCTATGGTATAGAAGGAAGCTCCCACAAATATGGTTTGTTCGCTGATACTGTTGTGGCCTATGAAATTATTTTGGCTGATGGCACTCTTGTGAGAGCCACCAAGGACAATGAGTACTCTGATCTATACTATGCCATTCCGTGGTCTCAGGGAACACTCGGCCTTCTTGTTGCTGCTGAGATCAGGCTTATACCCGTTAAGGAGTACATGAAGCTAACCTATAAACCTGTTGTTGGCACCCTGCAAGATCTTGCTCAGGCATATTGTGATTCTTTTGCTCCCAGAGATGGAGACCAGGATAATGAGGAGAAGGTTCCAGACTTTGTTGAAGGAATGATTTATACACCAACAGAAGGTGTGATGATGACAGGAAGATATGCTTCAAAGGAAGAGGCCAAGAAGAAGGGGAATAAGATCAACAGTGTAGGATGGTGGTTTAAACCCTGGTTCTATCAGCATGCACAGACGGCACTGAAGAAAGGAGAGTTTGTAGAATACATTCCTACCAGAGAATATTATCACAGGCACACGAGATGCTTGTACTGGGAGGGAAAGCTTATCCTCCCATTTGCTGATCAATTTTGGTTTAGGTATCTGTTTGGCTGGTTGATGCCACCCAAGGTTTCTCTCCTCAAGGCAACTCAAGGTGATGCTATAAGAAACTATTACCATGAAATGCATGTCATCCAGGACATGCTTGTTCCTTTGTACAAGGTGGGAGATGCTTTAGAATGGGTTCACCGTGAGATGGAGGTATACCCCATTTGGCTCTGCCCACACAAATTGTTCAAGCTGCCTGTCAAAACTATGATTTACCCCGAGCCAGGATTCGAACTACACCGCAGGCAAGGAGACACCCAAACTGCTCAAATGTACACAGATGTTGGAGTTTATTATGCACCAGGTCCTGTTCTTAGGGGTGAGGTATTTGATGGGGCAGAAGCAGTGCGTAAAATGGAGAACTGGTTGATTGAAAATCATGGTTTTCAGCCACAGTATGCTGTGTCAGAGCTGTCCGAGAAAAACTTCTGGAGGATGTTTGATGCTGGTTTATATGAGCATACTAGGAGGAAGTATGGAGCTGTTGGGACCTTTATGAGTGTATACTACAAATCAAAGAAGGGCAGGAAAACTGAGAAGGAGGTACAAGAAGCAGAGCAAGCGCACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGTAGACTGA

>Glyma12g03210.4   sequence type=CDS   gene model=Glyma12g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATCTTGAGGCTCCCTTGCGCCCTAAGAGGAAGAAGGTTTGGGTGGACTATTTCGTTCAGTTTCGATGGATCCTTGTTATTTTTGTGGTCCTTCCCATCTCCTTCACCATTTATTTCCTTACATACCTTGGGGATGTAAGATCTGAGTGGAAGTCCTATAAGACGCGTCAGAAGGAACATGATGAGAATGTGAAGAAGGTTATCAAACGTCTCAAACAGAGGAATCCATCAAAAGATGGTCTTGTCTGTACCGCTCGTAAGCCCTGGATTGCTGTTGGGATGCGGAACGTTGACTATAAGAGAGCCCGTCATTTTGAAGTTGATTTGTCTGCTTTCCGGAATGTACTTGAGATCGACAAAGAACGGATGATTGCAAGAGTTGAGCCCCTAGTCAACATGGGTCAGATCAGCAGGGTGACTGTACCCATGAATCTTTCCCTTGCTGTAGTTGCAGAGCTTGATGATCTAACTGTCGGTGGTCTCATTAACGGCTATGGTATAGAAGGAAGCTCCCACAAATATGGTTTGTTCGCTGATACTGTTGTGGCCTATGAAATTATTTTGGCTGATGGCACTCTTGTGAGAGCCACCAAGGACAATGAGTACTCTGATCTATACTATGCCATTCCGTGGTCTCAGGGAACACTCGGCCTTCTTGTTGCTGCTGAGATCAGGCTTATACCCGTTAAGGAGTACATGAAGCTAACCTATAAACCTGTTGTTGGCACCCTGCAAGATCTTGCTCAGGCATATTGTGATTCTTTTGCTCCCAGAGATGGAGACCAGGATAATGAGGAGAAGGTTCCAGACTTTGTTGAAGGAATGATTTATACACCAACAGAAGGTGTGATGATGACAGGAAGATATGCTTCAAAGGAAGAGGCCAAGAAGAAGGGGAATAAGATCAACAGTGTAGGATGGTGGTTTAAACCCTGGTTCTATCAGCATGCACAGACGGCACTGAAGAAAGGAGAGTTTGTAGAATACATTCCTACCAGAGAATATTATCACAGGCACACGAGATGCTTGTACTGGGAGGGAAAGCTTATCCTCCCATTTGCTGATCAATTTTGGTTTAGGTATCTGTTTGGCTGGTTGATGCCACCCAAGGTTTCTCTCCTCAAGGCAACTCAAGGTGATGCTATAAGAAACTATTACCATGAAATGCATGTCATCCAGGACATGCTTGTTCCTTTGTACAAGGTGGGAGATGCTTTAGAATGGGTTCACCGTGAGATGGAGGTATACCCCATTTGGCTCTGCCCACACAAATTGTTCAAGCTGCCTGTCAAAACTATGATTTACCCCGAGCCAGGATTCGAACTACACCGCAGGCAAGGAGACACCCAAACTGCTCAAATGTACACAGATGTTGGAGTTTATTATGCACCAGGTCCTGTTCTTAGGGGTGAGGTATTTGATGGGGCAGAAGCAGTGCGTAAAATGGAGAACTGGTTGATTGAAAATCATGGTTTTCAGCCACAGTATGCTGTGTCAGAGCTGTCCGAGAAAAACTTCTGGAGGATGTTTGATGCTGGTTTATATGAGCATACTAGGAGGAAGTATGGAGCTGTTGGGACCTTTATGAGTGTATACTACAAATCAAAGAAGGGCAGGAAAACTGAGAAGGAGGTACAAGAAGCAGAGCAAGCGCACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGTAGACTGA
Predicted protein sequences of Glyma12g03210
>Glyma12g03210.3   sequence type=predicted peptide   gene model=Glyma12g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDLEAPLRPKRKKVWVDYFVQFRWILVIFVVLPISFTIYFLTYLGDVRSEWKSYKTRQKEHDENVKKVIKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNVLEIDKERMIARVEPLVNMGQISRVTVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHKYGLFADTVVAYEIILADGTLVRATKDNEYSDLYYAIPWSQGTLGLLVAAEIRLIPVKEYMKLTYKPVVGTLQDLAQAYCDSFAPRDGDQDNEEKVPDFVEGMIYTPTEGVMMTGRYASKEEAKKKGNKINSVGWWFKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQFWFRYLFGWLMPPKVSLLKATQGDAIRNYYHEMHVIQDMLVPLYKVGDALEWVHREMEVYPIWLCPHKLFKLPVKTMIYPEPGFELHRRQGDTQTAQMYTDVGVYYAPGPVLRGEVFDGAEAVRKMENWLIENHGFQPQYAVSELSEKNFWRMFDAGLYEHTRRKYGAVGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEVDQPVD*

>Glyma12g03210.4   sequence type=predicted peptide   gene model=Glyma12g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDLEAPLRPKRKKVWVDYFVQFRWILVIFVVLPISFTIYFLTYLGDVRSEWKSYKTRQKEHDENVKKVIKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNVLEIDKERMIARVEPLVNMGQISRVTVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHKYGLFADTVVAYEIILADGTLVRATKDNEYSDLYYAIPWSQGTLGLLVAAEIRLIPVKEYMKLTYKPVVGTLQDLAQAYCDSFAPRDGDQDNEEKVPDFVEGMIYTPTEGVMMTGRYASKEEAKKKGNKINSVGWWFKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQFWFRYLFGWLMPPKVSLLKATQGDAIRNYYHEMHVIQDMLVPLYKVGDALEWVHREMEVYPIWLCPHKLFKLPVKTMIYPEPGFELHRRQGDTQTAQMYTDVGVYYAPGPVLRGEVFDGAEAVRKMENWLIENHGFQPQYAVSELSEKNFWRMFDAGLYEHTRRKYGAVGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEVDQPVD*






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