SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19840 | AT | Annotation by Michelle Graham. TAIR10: pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835 | SoyBase | E_val: 0 | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0070063 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA polymerase binding | SoyBase | N/A | ISS |
| KOG0155 | KOG | Transcription factor CA150 | JGI | ISS | |
| PTHR15377 | Panther | TRANSCRIPTION FACTOR CA150B RELATEDTCERG1 | JGI | ISS | |
| PTHR15377:SF3 | Panther | TRANSCRIPTION FACTOR CA150B RELATED | JGI | ISS | |
| PF00397 | PFAM | WW domain | JGI | ISS | |
| PF01846 | PFAM | FF domain | JGI | ISS | |
| UniRef100_G7JNF7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription elongation regulator n=1 Tax=Medicago truncatula RepID=G7JNF7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LPK7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPK7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03180 not represented in the dataset |
Glyma12g03180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g028100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03180.1 sequence type=CDS gene model=Glyma12g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCACCGGCGTGGTTGCCGCAGGAGGCGCAGCCACCTGTGTCCGGAGAAACGCCTCTTCCCATGGCTTCTTCCACCCCTAATTCTGCTCCTGCAACTCCTTCTACTGCTCCGGCACCGGCGTCGCCATTCGCTCATGGCATGCTTCAGAATGTTAACGCTTCTGGGAGTTCCCAGCTGTTATCGACGCATCCCGCGATTATATCCAATTCTGCAGTGAATCCCATGGTTGTTCAACCTCCAGGTGTCTCTTCACATGCCGCTCCTTCATTTTCATATAATATTCCCCAAAGTGGTGCCATTTTTTCTAGCAACCAGCAGCATGCACAATCTAGCACTGATGTTAGTAAATTGTCATCTGCGTCAAGCATCCCACATTCTGTCCCTGCTCATACTTCTACATCCCTAATGCCTCCACCCTCTGACCCTAATTATTGCCCAGCTACTTCATGGATGCCAACTGCCCTGTCTTTTCCTGTGCATCCAGTAATGCCTACTCAAGGGAATCCTGGTCCTCCTGGATTAGCATCATCTGCGATAATATCCTCCAATCCTGCTGCTCCATCCATACCTGCCTTGGCTGCTCCCCCTCAGGGACTTTGGTTACAGCCCCCACAGATGAGTGGTGTACTTAGGCCACCATATCTTCAATACCCTGCTCCTTTTCCTGGTCCCTTTCCATTTCCAGCACGTGGTGTTGCTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACCCCTGTGGGTGCTGCCGGTGGCACTCCTACACCTTCCGCTTCCAGTTATCAGCTGAGGGGAACAACTGCTTTGCAAACTGAAGTTATTTCAGGGTCTGCTGATGATAAGAAGAAATTAAATTCCGTTGACACTTTGAATGAGGATGCTGCTAATAATGATCAATTGGATGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCTGTGACAGGAGAATCAACATATCATAAACCTTCTGGCTTTAAAGGGGAGTCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGATTGATTTGCCTGGTACTGATTGGCGGTTGGTCTCCACTAGTGATGGAAAAAAATATTACTACAACAATCTAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTACTCTACAGAACTCATCATCAGCGTTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTATTACTCCCTCTTCTATTCATGCGCCATCAGTACAAATAGGACCTGAATCAAATGGTTCAAAAACAGTTGATTCTACAGCTAAGGGCGTGCAAGTAGATAATAACAAAGATAAACAAAAAGATACTAATGGTGATGCCGATGTCTCTGATACATCCTCAGATTCTGAAGATGAAGATAACGGGCCTTCAAAGGAGGAGTGCATCATTCAATTTAAGGAGATGCTTAAGGAGCGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGCTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCAGAAGAAGAACGCAAAGAAAAACGTGCTGCACAGAAGGCTGCAATTGAAGGATTTAAGCGGTTACTGGATGAAGCCTCAGAGGATATTAATTACAATACTGATTTTCAAACTTTCCGGAAGAAATGGGGAAACGATCCACGGTTTGAGGCATTGGACCGCAAGGAACAAGAGCACCTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGCTGCTGCTGCCAGTTTTAAGTCAATGCTTAAAGAGCGAGGAGATATGTCTTTTAACTCCCGTTGGGCCAGGGTTAAAGAAAGCTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCTGAACTGAAAGCTGCTGAACATGCAGCAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGGGAGCTGCGCAAAAGAAAGGAAAGAGAAGAACAGGAAATGGAAAGGGTGCGACTAAAAATTCGGAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGACCCTCTGGCATCATGGACGGAATCTAAGCCTAAATTAGAAAAGGATCCTCAAAGACGTGCAACTAATCCTGATCTTGATCCATCGGACACGGAAAAGCTCTTTCGGGAACATGTCAAGATGCTTCAGGAACGTTGTGCACATGAGTTTAGAGTTCTCTTGGCTGAAGTATTGACTTCTGATGCTGCATCTCAAGAAACCAACGATGGAAAAACAGTGCTTAATTCTTGGTCTACTGCTAAACGTCTTTTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGCCGCTATGCAGAGGATATGCTGCGGCGGCAAAAGGCATCTTATGATTCCAGGGAAGAGAAACATACAGATGCTAAAGGTAGAACTTATCTAGAATCTTCCAAACATCCATTGGAATCTGGGAGATCGCACGAGCGAAGATAA
>Glyma12g03180.1 sequence type=predicted peptide gene model=Glyma12g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPAWLPQEAQPPVSGETPLPMASSTPNSAPATPSTAPAPASPFAHGMLQNVNASGSSQLLSTHPAIISNSAVNPMVVQPPGVSSHAAPSFSYNIPQSGAIFSSNQQHAQSSTDVSKLSSASSIPHSVPAHTSTSLMPPPSDPNYCPATSWMPTALSFPVHPVMPTQGNPGPPGLASSAIISSNPAAPSIPALAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTPTPSASSYQLRGTTALQTEVISGSADDKKKLNSVDTLNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYHKPSGFKGESHQVSAQPTPVSMIDLPGTDWRLVSTSDGKKYYYNNLTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSTLQNSSSALDLIKKKLQDSGTPITPSSIHAPSVQIGPESNGSKTVDSTAKGVQVDNNKDKQKDTNGDADVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDFQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDMSFNSRWARVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQRRATNPDLDPSDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETNDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASYDSREEKHTDAKGRTYLESSKHPLESGRSHERR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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