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Report for Sequence Feature Glyma12g03170

Feature Type:gene_model
Chromosome:Gm12
Start:2077067
stop:2078327
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g03170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07860AT Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr3:2507895-2508656 FORWARD LENGTH=165 SoyBaseE_val: 2.00E-55ISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR14942Panther FAMILY NOT NAMED JGI ISS
UniRef100_G7JNF9UniRef Annotation by Michelle Graham. Most informative UniRef hit: U11/U12 small nuclear ribonucleoprotein 25 kDa protein n=1 Tax=Medicago truncatula RepID=G7JNF9_MEDTR SoyBaseE_val: 1.00E-57ISS
UniRef100_I1LPK6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPK6_SOYBN SoyBaseE_val: 8.00E-109ISS

Expression Patterns of Glyma12g03170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03170 not represented in the dataset
Glyma12g03170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g03170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g028000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g03170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g03170
>Glyma12g03170.1   sequence type=CDS   gene model=Glyma12g03170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAATATAATAAGAGCAGAGTGAAGAAGGCAAGGTTGAACTCATTGCTGACAACCTTGCTAGATGATCCTATACTTTCTGATTTCCCCAAGAACCCAACTTTTGCAGATGTTGACACTCTGATCAACCTTGAAATGGGTAGCGCCATGCGCATTTCTGTCCTGAAATTGGATGGAACTACATTTGGATTGAAACTTGCCATCAAGAAGAAGGTAAATGACATGGAACAATCCAGCATGGGTCACCGGCATATTTCCTGGAAGCACATATGTGAAAATTATTGTTTGTCATGCCATAACAACAAGCTCCTAGACGATAATGATGCACTTCAACATTTTGGTGTGAGAAATAATTCTCAGGTTCAATTTGTCTCCTATGTCATGACAAAAGAATCTCGGAGGCACTCGAAGAGGAGAAAGCACCATTTTTTTCATGGCCTTAATAGGCGCTCCTGA
Predicted protein sequences of Glyma12g03170
>Glyma12g03170.1   sequence type=predicted peptide   gene model=Glyma12g03170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEYNKSRVKKARLNSLLTTLLDDPILSDFPKNPTFADVDTLINLEMGSAMRISVLKLDGTTFGLKLAIKKKVNDMEQSSMGHRHISWKHICENYCLSCHNNKLLDDNDALQHFGVRNNSQVQFVSYVMTKESRRHSKRRKHHFFHGLNRRS*






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