SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50200 | AT | Annotation by Michelle Graham. TAIR10: Alanyl-tRNA synthetase | chr1:18591429-18598311 REVERSE LENGTH=1003 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006419 | GO-bp | Annotation by Michelle Graham. GO Biological Process: alanyl-tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0043039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004813 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alanine-tRNA ligase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0188 | KOG | Alanyl-tRNA synthetase | JGI | ISS | |
| PTHR11777 | Panther | ALANYL-TRNA SYNTHETASE | JGI | ISS | |
| PTHR11777:SF6 | Panther | ALANYL-TRNA SYNTHETASE | JGI | ISS | |
| PF01411 | PFAM | tRNA synthetases class II (A) | JGI | ISS | |
| PF07973 | PFAM | Threonyl and Alanyl tRNA synthetase second additional domain | JGI | ISS | |
| UniRef100_G7JNH3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alanyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7JNH3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LPK4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPK4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g03140 not represented in the dataset |
Glyma12g03140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g10860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g027800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g03140.1 sequence type=CDS gene model=Glyma12g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCGGAGCTGAGACTCACGATGTGGAGTGGCCGGCGAAGCGCGTGAGGGACACTTTCTTCAGCTTCTTCCAGGACAAAAATCACGTCAACTGGAAGTCTAGCCCTGTCGTCCCCTTCAATGACCCCACTCTTCTCTTCGTCAACGCTGGTATGAACCAGTTCAAGCCAATATTTTTGGGAACTGCGGATCCTAACACTGGCTTGAGCAAGCTCTCTCGTGCTTTCAACACACAGAAGTGCATTCGAGCTGGTAGTAAACACAATGATCTTGATGATGTGGGGAAGGATACTTACCATCACACCTTCTTTGAGATGTTGGGCAATTGGTCATTTGGGGATTACTTTAAAGTAGAAGCCATCAGCTGGGCGTGGGATCTTCTAACCAAAGTTTACAAATTACCATCAGATTGCATTTATGCCACATATTTTGGTGGTGATGATAAGTCTGGTCTTGCCCCTGATCTTGAGGCTAGGGATATATGGCTCAAGTTTTTACCTCCGGGACGTGTACTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGCCCTTGCGGACCTTGCACTGAAATACATTTTGACAGAATTGGCAACCGTGATGCTGCATCATTGGTTAATAACGATGATCCTACCTGCGTAGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTTCCTGCAAAGCATGTTGATATGGGCTTGGGTTTTGAACGTTTGACCTCTATACTTCAGGACAAAATGAGCAATTATGATACGGATGTCTTCTTGCCAATCTTTGACGTTATTCAGTGGGCAACTGGTGCCAGACCATATTCTGGGAAAGTTGGACCAGATGATGTAGATAATGTTGACATGGCATACAGGGTTGTTGCAGATCACATCAGAACTCTTTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAATGAGGGTCGTGAGTATGTTCTGAGACGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGTTTTTTCAATGGGCTTGTAAGTATTGTGGTGAATGTGATGGGTGATGTTTTCCCTGAGCTAAAACAACAGGAAACACACATACGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGGATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAGGGAAAGATACTGAGTGGGGAGGCAAGGTTTCCATTAGATCTCACTCAGCTGATGGCTGAAGAAAAGGGGTTAGTTGTTGATTTCAAAGGTTTCGATAGTGCTATGGAAGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGAGGCTGATGCTACCTCAGCATTGCACAAAAGGGGCATTGTCCCAACAGATGATAGCTTCAAATATGCTTGGTTCAAGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATACTGTTAATACCAGTGATGATATTGGGGTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCGCTTGAGGGCTTACATGCGTCATTTCAAGTGCGTAATGTTCAAGTTTATGGAGGCTTTGTTCTTCACATTGGTAATGGGACTGGTGTCTCTGTTGGTGACAAAGTAGTATGCAAGGTTGATTATGGAAGACGCGCCCTTATAGCCCCTAACCATACCTGCACGCACATGTTAAATTTTGCCCTTAGGGAAGTACTTGGTGATCGTGTTGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGGTTTGACTTTTCTCATGGCAAGCCTGTTGATGCTGACAATTTAAGGAGAATTGAATCAATTGTTAATGAGCAAATTAAAGCTGAGTTCGATGTAAGTGCAAAAGAGGCAACTCTTGCTGAAGCCAAGGGTATCAATGGTTTGCGAGCTGTTTTTGGGGAAGTCTATCCTGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTCCTTGCTGACCCAAAGAATGAAAAATGGTTATCTTTTTCGTCAGAGTTATGTGGAGGTACCCATATTTCAAACACACGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGAATTGCAAAAGGAATACGCAGAATAACAGCTGTTACAACTGATCGTGCTTATGATGCAATGAAAGTGGCAGATGAATTTGATCAGCAAGTAGACGATGCGGCTAAGTTAGAAGGAAGTTTGCTAGAAGAGAAAGTTTCATCATTGAAAAGCAATATTGAAACTTTATCTATTCCTGCTGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCGACTTCTGGATCAAGTAAGAAAAGCACAAAAGCTGGTTGCTGAGGAAAACAAGCGTAAAGCTTTAACGATTACAGCAGAGAAGGCGGAACTTGCTGCTTCAAATGGGAAAACTTTTTGCATATCTCACGTTGATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCTGTTACAAAAGTCATGGACCAGAAAGGCTTATCTGTGATGGTTTTTAGCACGGATGAATCTACTAACAAGGCTGTAGTTTGTGCTGGGGTGCCAGAGAAAGGAGGTCAAGGTAAGCTGGATGTGGCAGATTGGCTGAGTAATGCTTTGGGGCCTCTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCTACGGGTCAGGGTACAGAGGCATCACATGTAAACGAAGCTATGGATCTTGCAGAAAAATTTGCGTCGATGAAATTGAGTTAA
>Glyma12g03140.1 sequence type=predicted peptide gene model=Glyma12g03140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPGAETHDVEWPAKRVRDTFFSFFQDKNHVNWKSSPVVPFNDPTLLFVNAGMNQFKPIFLGTADPNTGLSKLSRAFNTQKCIRAGSKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAISWAWDLLTKVYKLPSDCIYATYFGGDDKSGLAPDLEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCVEIWNLVFIQFNREADGSLKPLPAKHVDMGLGFERLTSILQDKMSNYDTDVFLPIFDVIQWATGARPYSGKVGPDDVDNVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSIVVNVMGDVFPELKQQETHIRNVIEEEEESFGRTLIKGIEKFETAVRHVQGKILSGEARFPLDLTQLMAEEKGLVVDFKGFDSAMEAARERSRSAQTKQAGGAIVMEADATSALHKRGIVPTDDSFKYAWFKDHESVVKAIYTGSEFVDTVNTSDDIGVVLESTSFYAEQGGQIFDTGSLEGLHASFQVRNVQVYGGFVLHIGNGTGVSVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGDRVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAEFDVSAKEATLAEAKGINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPKNEKWLSFSSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADEFDQQVDDAAKLEGSLLEEKVSSLKSNIETLSIPAAKKADIKTKIARLLDQVRKAQKLVAEENKRKALTITAEKAELAASNGKTFCISHVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDESTNKAVVCAGVPEKGGQGKLDVADWLSNALGPLKGRCGKGKGGLATGQGTEASHVNEAMDLAEKFASMKLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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