Glyma12g03060 - SoyBase

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Report for Sequence Feature Glyma12g03060

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1961817
stop:	1967262
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g03060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05990	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:2322876-2324867 FORWARD LENGTH=390	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005835	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: fatty acid synthase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004318	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enoyl-[acyl-carrier-protein] reductase (NADH) activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016631	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enoyl-[acyl-carrier-protein] reductase activity	SoyBase	N/A	ISS
KOG0725	KOG	Reductases with broad range of substrate specificities	JGI		ISS
UniRef100_E6Y9A9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Enoyl-ACP reductase n=1 Tax=Arachis hypogaea RepID=E6Y9A9_ARAHY	SoyBase	E_val: 0	ISS
UniRef100_I1LPJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPJ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g03060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g03060 not represented in the dataset	Glyma12g03060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g03060

Paralog	Evidence	Comments
Glyma11g10770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g03060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g027300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g03060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g03060

Limit To All Plant Sequences

>Glyma12g03060.2   sequence type=transcript   gene model=Glyma12g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAATATACGAATTGGACTAAGATTTCGAGAAATCTTAACAGATTAATAGTACGTGTGAGTTTGTGCTTTGCTTTCGACAATTCCAAAGTCTTAGCAACCTGCAGCCGCTACAACTAAAAAAGCCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAGATTTAGGGTCCCTTCTGCCATACTGCACACGTTGAAGATGGCAGCAACATCATTTTCTGGCATGCAATTTGCAATGTCAAGATCATGCATTCCTGCATCACAAAAGATTGCAGATGCTGGTGCCGTGGTTCTTGGCGGCAAGTCCAAGATTGGATCGTGGAATAAACTTGCAAGTGCATGTCATATTGCATCAGTGCAACCTTTCAGGCGGGGCTTCACTTCATCGTCCATAAAATCTGTTAAAAGTGACACAAAGGCCTTGTTTGAGTTCAGTGCACAAAGTGCAGACTCAGGATTGTCAATTGATCTGAAAGGTAAAAGGGCTTTTATTGCTGGTGTTGCTGATGACAATGGATATGGATGGGCAATTGCAAAAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCACGCATATTACCAGATGGCTCGATGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCCCGATGATGTGCCTGAAGATATAAAAACAAACAAGCGCTATGCCGGATCATCTAAATGGACGGTTCAGGAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACGAGTTCTTGCTTTTGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCCGCTGGTCCACTGAGAAGTCGAGCTGCAAAAGCTATTGGATTTATTGATATGATGATTGATTACTCATCAGCCAATGCACCTCTACAGAAAGAAGTATTAGCAGAGGAGGTGGGCTACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATATGTTGACAATGGTCTGAATGCTATGGGTGTTGGAGTTGACAGTCCAATATTTAAAGATCTTAACATTCCCAAGGACCAGCATTAAGTGGTAGCTACCCCACAAAAGCTAGTGTCACCGGAATTAGCATAGCAATGGAGATATTTTTGTTTCACTGTAGCCATCCTCAAATTCTGCGGCTCCTACCTTCTTCCCAACAAGACAGTGCAGGATCCACTTTGAGCATTTACTTTGCTTTTTGTAGGCTATTTTTCAGTGTTTCCGGCAGACTTTTAAATATTTCTTTTTGCAATGTACTCAGAAGTGCAGGCCATATGATTATGAATGTAAGAGAATCTTTACATTGATCTATGCTTATTTGAGATGTACACTCGCAATAAAACTGTATTCCCGTGTGCCCTTTATCCTGTGGTAAGAACCTTGTGAGTTGTGACATAGAAATTGATCTTGTCCCCCGTCCCTTTTTCCATTTCCAATCACCCTTGCACATGAGCTTGCTACTGCAAATTTGCTAAGCATGAAAACTCAATATTAT

Coding sequences of Glyma12g03060

Limit To All Plant Sequences

>Glyma12g03060.1   sequence type=CDS   gene model=Glyma12g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCATGTTGTTCCTGAACAGCGACTTCAGTATCCGATTAATAGTACGTGTGAGTTTGTGCTTTGCTTTCGACAATTCCAAAGTCTTAGCAACCTGCAGCCGCTACAACTAAAAAAGCCCTTTGCTTTCTTTTCCACTCCTCACATTGGCTCTTTTATCACTATCAGATTTAGGGTCCCTTCTGCCATACTGCACACGTTGAAGATGGCAGCAACATCATTTTCTGGCATGCAATTTGCAATGTCAAGATCATGCATTCCTGCATCACAAAAGATTGCAGATGCTGGTGCCGTGGTTCTTGGCGGCAAGTCCAAGATTGGATCGTGGAATAAACTTGCAAGTGCATGTCATATTGCATCAGTGCAACCTTTCAGGCGGGGCTTCACTTCATCGTCCATAAAATCTGTTAAAAGTGACACAAAGGCCTTGTTTGAGTTCAGTGCACAAAGTGCAGACTCAGGATTGTCAATTGATCTGAAAGGTAAAAGGGCTTTTATTGCTGGTGTTGCTGATGACAATGGATATGGATGGGCAATTGCAAAAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCACGCATATTACCAGATGGCTCGATGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCCCGATGATGTGCCTGAAGATATAAAAACAAACAAGCGCTATGCCGGATCATCTAAATGGACGGTTCAGGAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACGAGTTCTTGCTTTTGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCCGCTGGTCCACTGAGAAGTCGAGCTGCAAAAGCTATTGGATTTATTGATATGATGATTGATTACTCATCAGCCAATGCACCTCTACAGAAAGAAGTATTAGCAGAGGAGGTGGGCTACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATATGTTGACAATGGTCTGAATGCTATGGGTGTTGGAGTTGACAGTCCAATATTTAAAGATCTTAACATTCCCAAGGACCAGCATTAA

>Glyma12g03060.2   sequence type=CDS   gene model=Glyma12g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAACATCATTTTCTGGCATGCAATTTGCAATGTCAAGATCATGCATTCCTGCATCACAAAAGATTGCAGATGCTGGTGCCGTGGTTCTTGGCGGCAAGTCCAAGATTGGATCGTGGAATAAACTTGCAAGTGCATGTCATATTGCATCAGTGCAACCTTTCAGGCGGGGCTTCACTTCATCGTCCATAAAATCTGTTAAAAGTGACACAAAGGCCTTGTTTGAGTTCAGTGCACAAAGTGCAGACTCAGGATTGTCAATTGATCTGAAAGGTAAAAGGGCTTTTATTGCTGGTGTTGCTGATGACAATGGATATGGATGGGCAATTGCAAAAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCACGCATATTACCAGATGGCTCGATGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCCCGATGATGTGCCTGAAGATATAAAAACAAACAAGCGCTATGCCGGATCATCTAAATGGACGGTTCAGGAAGTTGCTGAATCTGTTAAGGAAGACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGGTGGATCTTCAATATCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGATATGGTGGTGGTATGAGTTCTGCAAAAGCTGCACTGGAGAGTGATACACGAGTTCTTGCTTTTGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCCGCTGGTCCACTGAGAAGTCGAGCTGCAAAAGCTATTGGATTTATTGATATGATGATTGATTACTCATCAGCCAATGCACCTCTACAGAAAGAAGTATTAGCAGAGGAGGTGGGCTACACAGCTGCCTTCTTAGCATCACCTTTGGCATCTGCTATCACTGGTACTGTTCTATATGTTGACAATGGTCTGAATGCTATGGGTGTTGGAGTTGACAGTCCAATATTTAAAGATCTTAACATTCCCAAGGACCAGCATTAA

Predicted protein sequences of Glyma12g03060

Limit To All Plant Sequences

>Glyma12g03060.1   sequence type=predicted peptide   gene model=Glyma12g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHVVPEQRLQYPINSTCEFVLCFRQFQSLSNLQPLQLKKPFAFFSTPHIGSFITIRFRVPSAILHTLKMAATSFSGMQFAMSRSCIPASQKIADAGAVVLGGKSKIGSWNKLASACHIASVQPFRRGFTSSSIKSVKSDTKALFEFSAQSADSGLSIDLKGKRAFIAGVADDNGYGWAIAKALAAAGAEILVGTWVPALNIFESSLRRGKFDISRILPDGSMMEITKVYPLDAVFDNPDDVPEDIKTNKRYAGSSKWTVQEVAESVKEDFGSIDILVHSLANGPEVTKPLLETSRNGYLAAISASSYSYVSLLKHFLPILNPGGSSISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKRKIRVNTISAGPLRSRAAKAIGFIDMMIDYSSANAPLQKEVLAEEVGYTAAFLASPLASAITGTVLYVDNGLNAMGVGVDSPIFKDLNIPKDQH*

>Glyma12g03060.2   sequence type=predicted peptide   gene model=Glyma12g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATSFSGMQFAMSRSCIPASQKIADAGAVVLGGKSKIGSWNKLASACHIASVQPFRRGFTSSSIKSVKSDTKALFEFSAQSADSGLSIDLKGKRAFIAGVADDNGYGWAIAKALAAAGAEILVGTWVPALNIFESSLRRGKFDISRILPDGSMMEITKVYPLDAVFDNPDDVPEDIKTNKRYAGSSKWTVQEVAESVKEDFGSIDILVHSLANGPEVTKPLLETSRNGYLAAISASSYSYVSLLKHFLPILNPGGSSISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKRKIRVNTISAGPLRSRAAKAIGFIDMMIDYSSANAPLQKEVLAEEVGYTAAFLASPLASAITGTVLYVDNGLNAMGVGVDSPIFKDLNIPKDQH*

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