SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23150 | AT | Annotation by Michelle Graham. TAIR10: Tudor/PWWP/MBT domain-containing protein | chr5:7786173-7792080 FORWARD LENGTH=1392 | SoyBase | E_val: 7.00E-25 | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0048497 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of floral organ identity | SoyBase | N/A | ISS |
| GO:0048510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR12550 | Panther | HEPATOMA-DERIVED GROWTH FACTOR-RELATED | JGI | ISS | |
| PTHR12550:SF4 | Panther | UNCHARACTERIZED | JGI | ISS | |
| UniRef100_G7JPI0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hepatoma-derived growth factor-like protein n=1 Tax=Medicago truncatula RepID=G7JPI0_MEDTR | SoyBase | E_val: 4.00E-70 | ISS |
| UniRef100_UPI000233D485 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D485 related cluster n=1 Tax=unknown RepID=UPI000233D485 | SoyBase | E_val: 0 | ISS |
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Glyma12g02991 not represented in the dataset |
Glyma12g02991 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02991.1 sequence type=CDS gene model=Glyma12g02991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGATGTTTCAGGTCACCCAAAGGATGAAAGACCCATATTTTTTGACAGTTATGATGAAATTGATTTGCAACATCAGGACTCAGATAGGAATTTAGATCCAACTTCAAACATTTCAGAAGAGATGTCAGCTACTCCAGAGGGTTCTCCTCCTATGCCACTTGATTCACCTCCCCCACCCCCACCTTTGCCTTCATCACCTCCGCCACCTCCTCCTCCATTATCTCCATCTCCCCCCCCACCTCCCCCACCCCCAATGTTGCAACCCCCGTTTCCTCCTTTACCACCTTCAGCCCCTCAGGTGTCATTGGTTCCTCAATCGTCTGGACCAGCTCGGCCACTTCTCTCCCAGTCATTAATGCCACCTCAGTCATCACATCAGTCTTCCCCACAGTTGGGTTATCAGCAGAGTGTACCTCATGACTTTAGTGGCACTACTAATGGTAACCAAATAGTTCCAATGGTTGGGAATTCTTTTCCCGGAGGTCACAATAATGCAGTTGTCAAGAATGAAGTATTTCCACAGCCAACTGCTTATGCTCCAACCGCAGGCTGCAGCTCCCAGGAACCTTCTGGTTTTAACCCTTCAAGGCAATTAGAATACGGACAGAATGACATGTACCTAAATGCTCAAGTTCCTCAACCTAACCATCAATTTCAGCAGGGTAATCCCCCATTTGCTCAGAGGCACGCACATCCTGCCCCACCCCAAAATCCACCAAATCTATACTCATATTCAAATCCTACAGTTCAGCAGCATCTTCCACATTCATTCCATCCTCCCTTCCCTTTACCATCCCTTCCAGATGGCCGAAGACAATTTGTTGCTGATGAGCAATGGAGAGTGTCATCAAGTGAATTTAAAACAAACAATCAACATGGTGTATGGAGAGGGAGAAATCCTTCTTCATGTCCTGGTCCACCCTATGGGCAAGAAGGACATGGTGTACCTCAGATGATGCCCTGTAGGCCAGACATTCCTGCTGTTAATAGTTGGAGACCCACTTGA
>Glyma12g02991.1 sequence type=predicted peptide gene model=Glyma12g02991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDVSGHPKDERPIFFDSYDEIDLQHQDSDRNLDPTSNISEEMSATPEGSPPMPLDSPPPPPPLPSSPPPPPPPLSPSPPPPPPPPMLQPPFPPLPPSAPQVSLVPQSSGPARPLLSQSLMPPQSSHQSSPQLGYQQSVPHDFSGTTNGNQIVPMVGNSFPGGHNNAVVKNEVFPQPTAYAPTAGCSSQEPSGFNPSRQLEYGQNDMYLNAQVPQPNHQFQQGNPPFAQRHAHPAPPQNPPNLYSYSNPTVQQHLPHSFHPPFPLPSLPDGRRQFVADEQWRVSSSEFKTNNQHGVWRGRNPSSCPGPPYGQEGHGVPQMMPCRPDIPAVNSWRPT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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