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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23140 | AT | Annotation by Michelle Graham. TAIR10: nuclear-encoded CLP protease P7 | chr5:7783811-7784826 FORWARD LENGTH=241 | SoyBase | E_val: 6.00E-138 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005759 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix | SoyBase | N/A | ISS |
| GO:0009532 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplastic endopeptidase Clp complex | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG0840 | KOG | ATP-dependent Clp protease, proteolytic subunit | JGI | ISS | |
| PTHR10381 | Panther | PROTEASE FAMILY S14 CLPP PROTEASE | JGI | ISS | |
| PF00574 | PFAM | Clp protease | JGI | ISS | |
| UniRef100_I1LPJ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1LPJ0_SOYBN | SoyBase | E_val: 5.00E-175 | ISS |
| UniRef100_I1LPJ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Glycine max RepID=I1LPJ0_SOYBN | SoyBase | E_val: 5.00E-175 | ISS |
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Glyma12g02960 not represented in the dataset |
Glyma12g02960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g10660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g026400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02960.2 sequence type=transcript gene model=Glyma12g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAGAAAGAAGAAGGCGAAGGAGAGGAATATGGTTATGGTAGCATAAGGAAAGCCATCATCATTGAAGCCCTAATCAAAGCAAAACGAAAATCCCCAATCCTGCGTTGTATTGCGAGCCATGAGAGGCGTTGTGAAAGCGTTTGCGAGGAATCTGTTGTTCCATGGAAGGAACACTGAATGCAGTCGCTCCTACAGTCTGATCCCAATGGTGATAGAGCACTCTTCCCGAGGTGAGAGGGCATACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGGCCCATCTCCGACGACACCGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACCTCAATTCCCCCGGTGGCGCCATCTCCGCAGGGCTTGCTATCTATGATACGATGCAGTATATTCGGTCTCCGGTCAATACAATATGTATGGGTCAAGCTGCATCCATGGGTTCTCTTCTATTGGCGGCGGGTGCCAAGGGGGAGAGGCGGTCTCTTCCAAATGCGACAATCATGATTCACCAGCCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTAAATGAGTTGTATTCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGAGATAACTTTATGACTCCACAGGAGGCCAAAGAGTTTGGGCTCATTGATGAGGTTATTGATCAGAGACCTATGGCTTTGGTTTCTGATGCTGTTGGTAACGAAGGCAAAGATAAAGGTTCCAATTAGAACCAGATGGAGGAGAATAAGAAGAAGGAGAAGGAGAACTTAATTCGGATCCAAAGGATAAGGGCATGAGAACCCTCGGGGGAATTGGCCTGAGAAATGGAAGGGGAAGAGGATGAGAGTTTGTTGTTGTCGTTGATGCTTTTGGTTTCGGACAGTAATCTGAGAACTGCAAAGGAGGAACAGGTGGTGATGCGGTTTTGACCTGATTTGTGTGCCACAGCATGTGTGTAGTGTTGCTCCAATGCGACCTTTAGGAACGCCTTTCTCCCACGTCATGGAACCATTGCGGGAAAGCCCTTCACCTTAGACCCGCCGAAGCCCATGTTAGTGACCTGAGATCAAAGAGTTATCGTTGTCCATGCGGGAGAACATGCTTCACTGTCGCACTCGCTTATCATCACAATGTCACCATAATGAACGAAGAAGTTGTTGTGGTTTGCTTTTAACATGCCTCTCTCTATAGCATCTAATTAATCTTCAACCATTGCGGGGAAGTCCTCCACCTTAGACCCGCCGTAGCTCATGTTAGTGACTTGAGATCAGAGAGTTGTTGCTGCCCATGCTGGAGAACATGCTTCACTGTCGCACTCACTCATCATCACAATGTCACATAATGAACGAAGGAGTTGTTGTGGTTTGTTTTTAATATGTCTCTGTATCATTTAATTAATCTTCTCTGCATTTTGTTGGTGGTGGTGTTTGAAGCAAAATCGTTGAGAATCTTGGTGTTTTTCTTCCTCCTTTGTCTTTCTTTGTGCTTGTTTTTCTTCCCCTTTTAAAGCTGCTCAACAATAGGAGCAAAATCTTGGATTACGTTTCAAGGTAGGGATTGAGGCTTCAATGGGGTAATTGTAATAATTTTTTATGGAAATTTTTGTTGCTACCTTGAGTGAATGTTAATGTTGATTTTTGTTTGTGTGCATTGGCTGTCTTGGATTCGTAAGG
>Glyma12g02960.1 sequence type=CDS gene model=Glyma12g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGCGTTGTGAAAGCGTTTGCGAGGAATCTGTTGTTCCATGGAAGGAACACTGAATGCAGTCGCTCCTACAGTCTGATCCCAATGGTGATAGAGCACTCTTCCCGAGGTGAGAGGGCATACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGGCCCATCTCCGACGACACCGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACCTCAATTCCCCCGGTGGCGCCATCTCCGCAGGGCTTGCTATCTATGATACGATGCAGTATATTCGGTCTCCGGTCAATACAATATGTATGGGTCAAGCTGCATCCATGGGTTCTCTTCTATTGGCGGCGGGTGCCAAGGGGGAGAGGCGGTCTCTTCCAAATGCGACAATCATGATTCACCAGCCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTAAATGAGTTGTATTCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGAGATAACTTTATGACTCCACAGGAGGCCAAAGAGTTTGGGCTCATTGATGAGGTTATTGATCAGAGACCTATGGCTTTGGTTTCTGATGCTGTTGGTAACGAAGGCAAAGATAAAGGTTCCAATTAG >Glyma12g02960.2 sequence type=CDS gene model=Glyma12g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGCGTTGTGAAAGCGTTTGCGAGGAATCTGTTGTTCCATGGAAGGAACACTGAATGCAGTCGCTCCTACAGTCTGATCCCAATGGTGATAGAGCACTCTTCCCGAGGTGAGAGGGCATACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGGCCCATCTCCGACGACACCGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACCTCAATTCCCCCGGTGGCGCCATCTCCGCAGGGCTTGCTATCTATGATACGATGCAGTATATTCGGTCTCCGGTCAATACAATATGTATGGGTCAAGCTGCATCCATGGGTTCTCTTCTATTGGCGGCGGGTGCCAAGGGGGAGAGGCGGTCTCTTCCAAATGCGACAATCATGATTCACCAGCCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTAAATGAGTTGTATTCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGAGATAACTTTATGACTCCACAGGAGGCCAAAGAGTTTGGGCTCATTGATGAGGTTATTGATCAGAGACCTATGGCTTTGGTTTCTGATGCTGTTGGTAACGAAGGCAAAGATAAAGGTTCCAATTAG
>Glyma12g02960.1 sequence type=predicted peptide gene model=Glyma12g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGVVKAFARNLLFHGRNTECSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAISAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYSKHTGQSVEVIQTNMDRDNFMTPQEAKEFGLIDEVIDQRPMALVSDAVGNEGKDKGSN* >Glyma12g02960.2 sequence type=predicted peptide gene model=Glyma12g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGVVKAFARNLLFHGRNTECSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAISAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYSKHTGQSVEVIQTNMDRDNFMTPQEAKEFGLIDEVIDQRPMALVSDAVGNEGKDKGSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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