SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g02790

Feature Type:gene_model
Chromosome:Gm12
Start:1802047
stop:1802806
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g02790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16600AT Annotation by Michelle Graham. TAIR10: rotamase CYP 3 | chr2:7200862-7201383 FORWARD LENGTH=173 SoyBaseE_val: 5.00E-110ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF161Panther ROC3 (ROTAMASE CYP 3), PEPTIDYL-PROLYL CIS-TRANS I JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_I1LPH1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1LPH1_SOYBN SoyBaseE_val: 1.00E-124ISS
UniRef100_I1LPH1UniRef Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1LPH1_SOYBN SoyBaseE_val: 1.00E-124ISS

Expression Patterns of Glyma12g02790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02790
ParalogEvidenceComments
Glyma11g10480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g024700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g02790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g02790
>Glyma12g02790.2   sequence type=CDS   gene model=Glyma12g02790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGCATATCCTCAACTCCAAACTCAACCATAGTTACTTTACTTCACTCACACCCCGCCACGTGTTCCAATCGAACGGTCACTTCTGCATCACGCGCCACTATAAATATCTCTCTCTCGTCATCCGCAACCCCAAGCAAAACCCTAATCCCTCTTTCTTCCTCTTCCTCAGTAGTGCGATTTTCGATTCTCTTCTCTGCAACTATGCCTAACCCTAAGGTCTTCTTCGACATGACCATCGGCGGTCAACCTGCCGGCCGCATCGTGATGGAGCTCTACGCCGACGTGACTCCGAGCACCGCCGAGAACTTCCGCGCGCTCTGCACCGGCGAGAAGGGCGCCGGGCGGAGCGGCAAGCCCCTCCACTACAAAGGCTCGTCCTTCCACCGCGTGATCCCGAACTTCATGTGCCAGGGCGGCGACTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTCGTGAAGAAGCACACTGGTCCCGGCATCCTCTCCATGGCGAACGCCGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACGACGAAGACGGAGTGGCTCGACGGAAAGCACGTCGTGTTCGGACAGGTCGTCGAGGGGATGGACGTCGTCAAGGAGATAGAGAAGGTCGGATCCAGCTCCGGCAGGACCGCCAAGCCTGTCGTCGTCGCCGACTGTGGTCAACTCTCTTAG
Predicted protein sequences of Glyma12g02790
>Glyma12g02790.2   sequence type=predicted peptide   gene model=Glyma12g02790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSISSTPNSTIVTLLHSHPATCSNRTVTSASRATINISLSSSATPSKTLIPLSSSSSVVRFSILFSATMPNPKVFFDMTIGGQPAGRIVMELYADVTPSTAENFRALCTGEKGAGRSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVVEGMDVVKEIEKVGSSSGRTAKPVVVADCGQLS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo