SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma12g02750

Feature Type:gene_model
Chromosome:Gm12
Start:1768053
stop:1772235
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16595AT Annotation by Michelle Graham. TAIR10: Translocon-associated protein (TRAP), alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251 SoyBaseE_val: 6.00E-93ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1631 KOG Translocon-associated complex TRAP, alpha subunit JGI ISS
PTHR12924Panther TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT JGI ISS
PF03896PFAM Translocon-associated protein (TRAP), alpha subunit JGI ISS
UniRef100_B9STC6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Translocon-associated protein, alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9STC6_RICCO SoyBaseE_val: 9.00E-130ISS
UniRef100_C6T7K0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T7K0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g10430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g024500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g02750.1   sequence type=CDS   gene model=Glyma12g02750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTGCATCGACAAATTTTGGGTTTTCGCCCTCGCTCTTCTCCTCCTCGCTTCCCCTCTCCTCCAAGTTGCTAGGTGCCAGTCAGACTCTGATGATGTAGTGGAGGCTGCTGAAGAATCAGGTGATATTGGCATTGTTGGTGATGATGTCCAAGACTTTGGTGATGGGACTTTCCCTTCTGCTCCAGGAATTGAAACAATAAGTGTATTTCCGAAAAATAGTGCAAGATTGATAACAGCTGGAGAAGAGTCAGAGCTGCTTGTTGGTGTTAAAAATGATGGGGATTCAAGCTTGAATGTTATTGCGATCAAGGCTAGTGTTCACCTTCCTTTTGATCACCGTATGCTGGTTCAAAATCTTACTGCACAGGGTTTTAACAATGGTTCTGTACCAGCCTCAGCACAAGCTACTTTCCCTTATTTATTTGCAGTCAGTAAGTTCTTGCAGTCTGGAACTTTTGACCTTGTGGGCACTATCATATACGAGATAGATGAACATCCATTCCAAAGCACCTTTTTTAATGGCACTGTTGAAGTTGTTGAATCTGGTGCTTTTCTAAGCATGGAATCTGTTTTTCTTGTTACTCTTGGGGTTGCACTCCTTGTCCTCCTGGGGCTATGGATTCATGGTCAAATACAACACCTATCTAAGAAAACAAAGAGGGCGCCAAAAGTTGAAGTTGGGACTAGGACTACTGATGCTTCAACAGATGAATGGCTGCAGGGAACTGCATATACTCAGTCTATGTCAAGCAAGTCAAAGAAGAAGAAGTAG

>Glyma12g02750.1   sequence type=predicted peptide   gene model=Glyma12g02750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACIDKFWVFALALLLLASPLLQVARCQSDSDDVVEAAEESGDIGIVGDDVQDFGDGTFPSAPGIETISVFPKNSARLITAGEESELLVGVKNDGDSSLNVIAIKASVHLPFDHRMLVQNLTAQGFNNGSVPASAQATFPYLFAVSKFLQSGTFDLVGTIIYEIDEHPFQSTFFNGTVEVVESGAFLSMESVFLVTLGVALLVLLGLWIHGQIQHLSKKTKRAPKVEVGTRTTDASTDEWLQGTAYTQSMSSKSKKKK*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo