Glyma12g02690 - SoyBase

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Report for Sequence Feature Glyma12g02690

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1743032
stop:	1746831
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34860	AT	Annotation by Michelle Graham. TAIR10: Plant neutral invertase family protein \| chr4:16609955-16612019 REVERSE LENGTH=571	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004564	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity	SoyBase	N/A	ISS
PF04853	PFAM	Plant neutral invertase	JGI		ISS
UniRef100_G7J8G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neutral invertase-like protein n=1 Tax=Medicago truncatula RepID=G7J8G8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LPG4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LPG4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g02690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02690

Paralog	Evidence	Comments
Glyma11g10400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g024000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g02690

Limit To All Plant Sequences

>Glyma12g02690.2   sequence type=CDS   gene model=Glyma12g02690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTGGTGTCAAAATCAAAACGGAAGTTTTAAAAGTACAGATGCACTATGTATTGCGGCAGAAGCTGATGAGGAGGAACTTGATTTCACAAAGGTAGACAAGCCAAGGCCTATAGAAAGATGCAAATCATGCGAAGTAAGATCACTAAGTGAACTGTCCAAAGTTTCTGAGAACTCTTCTTACTCAATAGACCATCTTGATAAGGCAGCTTCTCTTCAGCCAAAATCGGGTATGAATACCCCAGGATCATTGGTATTGGATCCACAATCACATCCAATAGTATCTGAAGGCTGGGAAGCTCTGATGCGTTCCTTGGTGTATTTTCGTGGTCAGCGTGTTGGTACAATTGCTGCTATGGATAGTTCTGATGAGAAAATCAATTACGACCAGGTGTTTGTAAGAGACTTTGTCCCTAGTGCTTTGGCTTTTCTGATGAAGGGGGAACCTGAAATTGTTAGAAATTTTATCTTGAAGACCCTTCGCCTTCAATCATGGGAGAAAATGATTGATAAGTTTCACCTAGCAGAAGGAGTAATGCCAGCAAGTTTTAAAGTACTTCATGATCCAGTCAGAAACCATGAGACCTTGATAGCAGACTTTGGTGAAAGTGCAATAGGCCGGGTTGCTCCTATTGATTCGGGATTTTGGTGGATTATATTACTTCGTGCATACACAAAGTCTACAGGAGACAATTCCTTGGCTGAACTGCCTGAATGTCAGAAGGGCATGCGCTTGATTTTGAATTTATGCCTTTCAGAGGGATTTGACACCTTCCCCACTCTACTATGTGCGGATGGATGCTGCATGATAGATCGTAGAATGGGTGTTTATGGTTATCCAATTGAGATTCAAGCACTTTTCTTCATGGCTTTAAGGTGTGCCTTGATATTGCTAAAGGAAGATGCTGAAGGCGAGGAGTTCAGAGAAAGAATTACCAAACGATTGCATGCCTTAAGCTATCACCTGAGAAGCTATTTTTGGTTGGATTTGAAGCAACTTAACAATGTATATCGCTTCAAAACAGAAGAATACTCACATACTGCAGTCAACAAGTTTAATGTCATTCCTGATTCTCTACCTGATTGGATTTTTGATTTCATGCCACTTAAAGGTGGTTACTTTATTGGGAATGTCAGTCCTGCTAGGATGGATTTCCGTTGGTTTTGCCTTGGTAATTGCATAGCTATTTTGTCCAGCTTGGCTACTCCTGAGCAATCCATTGCAATCATGGATCTCATTGAATCTCGGTGGCAGGAACTGATTGGGGAGATGCCACTAAAAGTTTGTTATCCAGCCCTTGAAAACCATGAGTGGCGAATCATAACTGGATGTGACCCAAAAAACACTAGATGGAGTTACCACAATGGAGGATCTTGGCCAGTTCTATTATGGCTTCTTGCTGCTGCCTCTATCAAGACAGGACGACCCCAAATTGCAAAACGTGCCCTTGAAATTGTTGAAACTAGGTTGTTCAAGGACAACTGGCCCGAATATTATGATGGAAAGCTTGGTCGTTATATTGGGAAGCAAGCCCGCAAATGCCAAACTTGGTCCATTGCTGGTTACTTGGTGGCTAAGATGTTGTTGGACGATCCATCACATTTAGGTATGGTGGCACTAGAGGAAGACAAACACCAAAAACCTGTGCTCAGAAGATCAAATTCATTGTGA

Predicted protein sequences of Glyma12g02690

Limit To All Plant Sequences

>Glyma12g02690.2   sequence type=predicted peptide   gene model=Glyma12g02690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDWCQNQNGSFKSTDALCIAAEADEEELDFTKVDKPRPIERCKSCEVRSLSELSKVSENSSYSIDHLDKAASLQPKSGMNTPGSLVLDPQSHPIVSEGWEALMRSLVYFRGQRVGTIAAMDSSDEKINYDQVFVRDFVPSALAFLMKGEPEIVRNFILKTLRLQSWEKMIDKFHLAEGVMPASFKVLHDPVRNHETLIADFGESAIGRVAPIDSGFWWIILLRAYTKSTGDNSLAELPECQKGMRLILNLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALILLKEDAEGEEFRERITKRLHALSYHLRSYFWLDLKQLNNVYRFKTEEYSHTAVNKFNVIPDSLPDWIFDFMPLKGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPEQSIAIMDLIESRWQELIGEMPLKVCYPALENHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLAAASIKTGRPQIAKRALEIVETRLFKDNWPEYYDGKLGRYIGKQARKCQTWSIAGYLVAKMLLDDPSHLGMVALEEDKHQKPVLRRSNSL*

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