Glyma12g02670 - SoyBase

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Report for Sequence Feature Glyma12g02670

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1736642
stop:	1738254
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34850	AT	Annotation by Michelle Graham. TAIR10: Chalcone and stilbene synthase family protein \| chr4:16608349-16609720 FORWARD LENGTH=392	SoyBase	E_val: 0	ISS
GO:0009699	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0030639	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyketide biosynthetic process	SoyBase	N/A	ISS
GO:0080110	GO-bp	Annotation by Michelle Graham. GO Biological Process: sporopollenin biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0090439	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tetraketide alpha-pyrone synthase activity	SoyBase	N/A	ISS
PTHR11877	Panther	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	JGI		ISS
PTHR11877:SF9	Panther	GERANYL GERANYL DIPHOSPHATE SYNTHASE	JGI		ISS
PF00195	PFAM	Chalcone and stilbene synthases, N-terminal domain	JGI		ISS
PF02797	PFAM	Chalcone and stilbene synthases, C-terminal domain	JGI		ISS
UniRef100_B9H143	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chs-like protein n=1 Tax=Populus trichocarpa RepID=B9H143_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D313	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D313 related cluster n=1 Tax=unknown RepID=UPI000233D313	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g02670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02670

Paralog	Evidence	Comments
Glyma11g10380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g023800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g02670

Limit To All Plant Sequences

>Glyma12g02670.1   sequence type=CDS   gene model=Glyma12g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACGAAGGTATAATGAATGGTGTTATAAAGCAGCGAGTCAACCCCGGGAAGGCTACCATATTAGCTCTTGGCAAGGCTTTCCCTCACCAGCTTGTCATGCAAGAGTATTTGGTTGATGGATATTCACAAACTGTGACAATCCTGAACTCAAGCAGAAGCTCACTAGACTTTGTAAGCAAGACAACCACAGTGAAAACAAGGTACGTGGTTATGTCAGAGGAGATACTGAAAAAGTATCCAGAACTTGCAGCTGAAGGCATCCCCACAGTGAAGCAACGGCTAGAGATATGCAACGAGGCAGTGACAGAAATGGCAATTGAAGCTTCCCAAACTTGCATCAAGAACTGGGGTGGATCTTTATCAGACGTAACACACTTGGTGTATGTGTCATTCAGTGAAGCTAGACTACCTGGTGGTGACCTTTACCTAGAGAAAGGACTAGGACTGAGCCCTGATACTCAACGAGTCATGCTCTATTTTGCTGGTTGTTCTGGCGGCGTGGCCGGCCTACTGCTTCTTGCTACCTCAGAAACTACTATTATTGGGTCCAAACCACCAAGTGTAGATAGACCCTATGATCTTGTTGGGGTGGCACTCTTTGGGGATGGTGCTGGTGCCATGATAATTGGCTCAGACCCAATATTGGAATCTGAGAGGCCTCTCTTTGAGCTTCACACTGCAGTTCAGGAGTTTTTGCGACACACTGAGAAGAAAATAGATGGGAGGCTGACAGAAGAAGGAATAAGCTTCAAGTTAGCTAGGGAACTTCCTCAAATAATTGAAGACAATGTTGAAGGATTCTGTGACAAATTAATGAGTGTTGTTGGGTTTGAGAACAAGGAGTACAACAAGCTGTTTTGGGCTGTACATCCAGGGGGGCCAGCCATCTTGAACCGCATTGAGAAGAGACTTGATTTGTTGCCAGAGAAGCTGAGTGCAAGTAGACGGGCTCTCATGGATTATGGCAATGCTAGCAGTAACACCATTGTGTATGTGCTGGAGTTTATGATAGAGGAAAGTCTCAAGATTAGAAAGGATGGCAGAGGAGATCTTGAATGGGGCTTGATACTTGCTTTTGGACCCGGGATTACATTTGAGGGAATTCTGGCCAGGAACTTGTGTGCTTGA

Predicted protein sequences of Glyma12g02670

Limit To All Plant Sequences

>Glyma12g02670.1   sequence type=predicted peptide   gene model=Glyma12g02670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNEGIMNGVIKQRVNPGKATILALGKAFPHQLVMQEYLVDGYSQTVTILNSSRSSLDFVSKTTTVKTRYVVMSEEILKKYPELAAEGIPTVKQRLEICNEAVTEMAIEASQTCIKNWGGSLSDVTHLVYVSFSEARLPGGDLYLEKGLGLSPDTQRVMLYFAGCSGGVAGLLLLATSETTIIGSKPPSVDRPYDLVGVALFGDGAGAMIIGSDPILESERPLFELHTAVQEFLRHTEKKIDGRLTEEGISFKLARELPQIIEDNVEGFCDKLMSVVGFENKEYNKLFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEFMIEESLKIRKDGRGDLEWGLILAFGPGITFEGILARNLCA*

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