Glyma12g02620 - SoyBase

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Report for Sequence Feature Glyma12g02620

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1714041
stop:	1717635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38430	AT	Annotation by Michelle Graham. TAIR10: rho guanyl-nucleotide exchange factor 1 \| chr4:17986643-17988659 FORWARD LENGTH=548	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0080092	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
GO:0005089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
PF03759	PFAM	PRONE (Plant-specific Rop nucleotide exchanger)	JGI		ISS
UniRef100_F6LPV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RopGEF1 n=1 Tax=Medicago truncatula RepID=F6LPV0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LPF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPF7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g02620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g02620 not represented in the dataset	Glyma12g02620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02620

Paralog	Evidence	Comments
Glyma11g10330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g023400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g02620

Limit To All Plant Sequences

>Glyma12g02620.2   sequence type=transcript   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAACTTAACGGTGCTGTGACGGAAAGACAGTCTCTGCAAACGGCGTTTCTTTTCTTGCTTTTGGCCCTATCAAATCATGAGCAGCACAAGAACTAGAACACTATCTCAGAGAGTGAAAGAGAAGGTTACCAATTAACCCACACTTTACCAATTATTCACTCACTCACTCACTGTTGCAGCAACGCCATTGTGTGAAATCAATGTTTTGAGATTTGTTGGGAACAATGGGGAGCGTTTCGTCCGAAGATGGTTCCGACCGTTGTGGGAGTTATAGCCTCAGTGCTGATGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCACGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCGCGGCCCGTCGCTGCTCACTTTAACTTCCCGCCGGCACAGGTAATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTGACCTCGATTTGTCGGAAGTGGAAATGATGAAGGAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGAAAACCATGTGGCGTAGAGAAATGGAGTGGCTGTTATGTGTGAGTGATTCCATTGTGGAGTTAGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCCACGCGGCCTCGCTCGGATTTGTATATCAATCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAATATGCTTGATGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGAATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCCCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAGCAGTGTAGGGATTGCACCAATCAGATTCTAAAAGCTGCTGTTGCAATTAATACTTCTGTTCTTGCTGAAATGGAAATTCCCGGTGCCTACATTGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCAACAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGCTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGATGGTGAGAAGAACAAGAACAACTTTCTTGCCCAACGGGCTGAGACGCTTCTAGAAAGCTTGAAACACAGATTTCCAGGGCTCCCTCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTATATGTAGATGATAGCATAAAGCGGTGTGCAGCTGCAGATTCTCTCTCGTTGTTCAGCAGGGGAGGTTTTGGAGGCATGCCCATTCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAGCACACCCCATATGCCTCCCCATTTGCAACGCCAACATTTTGTTCCTCCACTCCTGTTACTGGGAGCCCTTGCAGTCCTGCAAGGATACATGATGTGAAAAGGAATGCTCCAAAGGAGGGTGCAGATTCGAAGACTGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATATGCCGGAAACCTCAGTGCAAGAAGAGCATCTGGCGATGCTCCAGAAAGAGACTGAGTTCTACAGTTAGTATGACTTGCATCCATAAGATGGTCATCTCTTGTCTTTTTAATGTGGATCTGGCTAAAGTCCTTGGTCCTGCTCCCTGTATATGTGGGTCTAATTTTTGTATATTCTTAGGCAGAACTAGTAGGATTATGTTGAATGATCATGCTAATGGATCATTAGTTAAAAATGTTTCCTCCCCAGTATAAATTTCTAGAGATAGGCCATGATATTGTTTTTTCTACTGATGCCAAATTTTCTAAGTTGAGTTCTGGACTACATAACCCATTCGAGATTCAGCATTAATCATTTGCTGATGTACCCCTGCTCTCCTCACTGCCGTAACATTAAATGAAATTTAGCCACGCCGAAACA

Coding sequences of Glyma12g02620

Limit To All Plant Sequences

>Glyma12g02620.1   sequence type=CDS   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGTTTCGTCCGAAGATGGTTCCGACCGTTGTGGGAGTTATAGCCTCAGTGCTGATGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCACGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCGCGGCCCGTCGCTGCTCACTTTAACTTCCCGCCGGCACAGGTAATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTGACCTCGATTTGTCGGAGCAATTGCATTTTGCAGAAGTGGAAATGATGAAGGAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGAAAACCATGTGGCGTAGAGAAATGGAGTGGCTGTTATGTGTGAGTGATTCCATTGTGGAGTTAGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCCACGCGGCCTCGCTCGGATTTGTATATCAATCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAATATGCTTGATGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGAATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCCCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAGCAGTGTAGGGATTGCACCAATCAGATTCTAAAAGCTGCTGTTGCAATTAATACTTCTGTTCTTGCTGAAATGGAAATTCCCGGTGCCTACATTGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCAACAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGCTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGATGGTGAGAAGAACAAGAACAACTTTCTTGCCCAACGGGCTGAGACGCTTCTAGAAAGCTTGAAACACAGATTTCCAGGGCTCCCTCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTATATGTAGATGATAGCATAAAGCGGTGTGCAGCTGCAGATTCTCTCTCGTTGTTCAGCAGGGGAGGTTTTGGAGGCATGCCCATTCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAGCACACCCCATATGCCTCCCCATTTGCAACGCCAACATTTTGTTCCTCCACTCCTGTTACTGGGAGCCCTTGCAGTCCTGCAAGGATACATGATGTGAAAAGGAATGCTCCAAAGGAGGGTGCAGATTCGAAGACTGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATATGCCGGAAACCTCAGTGCAAGAAGAGCATCTGGCGATGCTCCAGAAAGAGACTGA

>Glyma12g02620.2   sequence type=CDS   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGTTTCGTCCGAAGATGGTTCCGACCGTTGTGGGAGTTATAGCCTCAGTGCTGATGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCACGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCGCGGCCCGTCGCTGCTCACTTTAACTTCCCGCCGGCACAGGTAATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTGACCTCGATTTGTCGGAAGTGGAAATGATGAAGGAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGAAAACCATGTGGCGTAGAGAAATGGAGTGGCTGTTATGTGTGAGTGATTCCATTGTGGAGTTAGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCCACGCGGCCTCGCTCGGATTTGTATATCAATCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAATATGCTTGATGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGAATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCCCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAGCAGTGTAGGGATTGCACCAATCAGATTCTAAAAGCTGCTGTTGCAATTAATACTTCTGTTCTTGCTGAAATGGAAATTCCCGGTGCCTACATTGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCAACAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGCTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGATGGTGAGAAGAACAAGAACAACTTTCTTGCCCAACGGGCTGAGACGCTTCTAGAAAGCTTGAAACACAGATTTCCAGGGCTCCCTCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTATATGTAGATGATAGCATAAAGCGGTGTGCAGCTGCAGATTCTCTCTCGTTGTTCAGCAGGGGAGGTTTTGGAGGCATGCCCATTCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAGCACACCCCATATGCCTCCCCATTTGCAACGCCAACATTTTGTTCCTCCACTCCTGTTACTGGGAGCCCTTGCAGTCCTGCAAGGATACATGATGTGAAAAGGAATGCTCCAAAGGAGGGTGCAGATTCGAAGACTGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATATGCCGGAAACCTCAGTGCAAGAAGAGCATCTGGCGATGCTCCAGAAAGAGACTGA

Predicted protein sequences of Glyma12g02620

Limit To All Plant Sequences

>Glyma12g02620.1   sequence type=predicted peptide   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVSSEDGSDRCGSYSLSADVSESESCSSFSARRFDAEGASSSANLSPRPVAAHFNFPPAQVMLPVIGGKDVVVWDHKRDLDLSEQLHFAEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDSKDCDAYGRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLAEMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIANRIEAAIHVWRLKDHKKHLSSAKSRRSWGGKVKGLVADGEKNKNNFLAQRAETLLESLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSLFSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHDVKRNAPKEGADSKTEKLATSEFERVWSYAGNLSARRASGDAPERD*

>Glyma12g02620.2   sequence type=predicted peptide   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVSSEDGSDRCGSYSLSADVSESESCSSFSARRFDAEGASSSANLSPRPVAAHFNFPPAQVMLPVIGGKDVVVWDHKRDLDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDSKDCDAYGRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLAEMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIANRIEAAIHVWRLKDHKKHLSSAKSRRSWGGKVKGLVADGEKNKNNFLAQRAETLLESLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSLFSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHDVKRNAPKEGADSKTEKLATSEFERVWSYAGNLSARRASGDAPERD*

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