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Report for Sequence Feature Glyma12g02620

Feature Type:gene_model
Chromosome:Gm12
Start:1714041
stop:1717635
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g02620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38430AT Annotation by Michelle Graham. TAIR10: rho guanyl-nucleotide exchange factor 1 | chr4:17986643-17988659 FORWARD LENGTH=548 SoyBaseE_val: 0ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0008361GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell size SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0080092GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016324GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane SoyBaseN/AISS
GO:0005089GO-mf Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity SoyBaseN/AISS
PF03759PFAM PRONE (Plant-specific Rop nucleotide exchanger) JGI ISS
UniRef100_F6LPV0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RopGEF1 n=1 Tax=Medicago truncatula RepID=F6LPV0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LPF7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPF7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g02620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02620
ParalogEvidenceComments
Glyma11g10330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g023400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g02620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g02620
>Glyma12g02620.2   sequence type=transcript   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAACTTAACGGTGCTGTGACGGAAAGACAGTCTCTGCAAACGGCGTTTCTTTTCTTGCTTTTGGCCCTATCAAATCATGAGCAGCACAAGAACTAGAACACTATCTCAGAGAGTGAAAGAGAAGGTTACCAATTAACCCACACTTTACCAATTATTCACTCACTCACTCACTGTTGCAGCAACGCCATTGTGTGAAATCAATGTTTTGAGATTTGTTGGGAACAATGGGGAGCGTTTCGTCCGAAGATGGTTCCGACCGTTGTGGGAGTTATAGCCTCAGTGCTGATGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCACGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCGCGGCCCGTCGCTGCTCACTTTAACTTCCCGCCGGCACAGGTAATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTGACCTCGATTTGTCGGAAGTGGAAATGATGAAGGAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGAAAACCATGTGGCGTAGAGAAATGGAGTGGCTGTTATGTGTGAGTGATTCCATTGTGGAGTTAGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCCACGCGGCCTCGCTCGGATTTGTATATCAATCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAATATGCTTGATGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGAATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCCCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAGCAGTGTAGGGATTGCACCAATCAGATTCTAAAAGCTGCTGTTGCAATTAATACTTCTGTTCTTGCTGAAATGGAAATTCCCGGTGCCTACATTGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCAACAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGCTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGATGGTGAGAAGAACAAGAACAACTTTCTTGCCCAACGGGCTGAGACGCTTCTAGAAAGCTTGAAACACAGATTTCCAGGGCTCCCTCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTATATGTAGATGATAGCATAAAGCGGTGTGCAGCTGCAGATTCTCTCTCGTTGTTCAGCAGGGGAGGTTTTGGAGGCATGCCCATTCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAGCACACCCCATATGCCTCCCCATTTGCAACGCCAACATTTTGTTCCTCCACTCCTGTTACTGGGAGCCCTTGCAGTCCTGCAAGGATACATGATGTGAAAAGGAATGCTCCAAAGGAGGGTGCAGATTCGAAGACTGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATATGCCGGAAACCTCAGTGCAAGAAGAGCATCTGGCGATGCTCCAGAAAGAGACTGAGTTCTACAGTTAGTATGACTTGCATCCATAAGATGGTCATCTCTTGTCTTTTTAATGTGGATCTGGCTAAAGTCCTTGGTCCTGCTCCCTGTATATGTGGGTCTAATTTTTGTATATTCTTAGGCAGAACTAGTAGGATTATGTTGAATGATCATGCTAATGGATCATTAGTTAAAAATGTTTCCTCCCCAGTATAAATTTCTAGAGATAGGCCATGATATTGTTTTTTCTACTGATGCCAAATTTTCTAAGTTGAGTTCTGGACTACATAACCCATTCGAGATTCAGCATTAATCATTTGCTGATGTACCCCTGCTCTCCTCACTGCCGTAACATTAAATGAAATTTAGCCACGCCGAAACA
Coding sequences of Glyma12g02620
>Glyma12g02620.1   sequence type=CDS   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGTTTCGTCCGAAGATGGTTCCGACCGTTGTGGGAGTTATAGCCTCAGTGCTGATGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCACGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCGCGGCCCGTCGCTGCTCACTTTAACTTCCCGCCGGCACAGGTAATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTGACCTCGATTTGTCGGAGCAATTGCATTTTGCAGAAGTGGAAATGATGAAGGAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGAAAACCATGTGGCGTAGAGAAATGGAGTGGCTGTTATGTGTGAGTGATTCCATTGTGGAGTTAGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCCACGCGGCCTCGCTCGGATTTGTATATCAATCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAATATGCTTGATGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGAATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCCCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAGCAGTGTAGGGATTGCACCAATCAGATTCTAAAAGCTGCTGTTGCAATTAATACTTCTGTTCTTGCTGAAATGGAAATTCCCGGTGCCTACATTGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCAACAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGCTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGATGGTGAGAAGAACAAGAACAACTTTCTTGCCCAACGGGCTGAGACGCTTCTAGAAAGCTTGAAACACAGATTTCCAGGGCTCCCTCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTATATGTAGATGATAGCATAAAGCGGTGTGCAGCTGCAGATTCTCTCTCGTTGTTCAGCAGGGGAGGTTTTGGAGGCATGCCCATTCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAGCACACCCCATATGCCTCCCCATTTGCAACGCCAACATTTTGTTCCTCCACTCCTGTTACTGGGAGCCCTTGCAGTCCTGCAAGGATACATGATGTGAAAAGGAATGCTCCAAAGGAGGGTGCAGATTCGAAGACTGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATATGCCGGAAACCTCAGTGCAAGAAGAGCATCTGGCGATGCTCCAGAAAGAGACTGA

>Glyma12g02620.2   sequence type=CDS   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCGTTTCGTCCGAAGATGGTTCCGACCGTTGTGGGAGTTATAGCCTCAGTGCTGATGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCACGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCGCGGCCCGTCGCTGCTCACTTTAACTTCCCGCCGGCACAGGTAATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTGACCTCGATTTGTCGGAAGTGGAAATGATGAAGGAGAGGTTTGCTAAGCTGCTTCTGGGAGAGGACATGTCTGGAGGCGGAAAAGGGGTGTGTACTGCACTTGCAATCTCCAATGCAATAACTAATCTCTCTGCAACCGTTTTTGGCGAACTGTGGAGGTTGGAGCCACTGGCGCCACAGAAGAAAACCATGTGGCGTAGAGAAATGGAGTGGCTGTTATGTGTGAGTGATTCCATTGTGGAGTTAGTGCCATCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCCACGCGGCCTCGCTCGGATTTGTATATCAATCTTCCGGCTCTGAAGAAGCTTGATGGGATGCTGCTTAATATGCTTGATGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGAATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCCCCAAATGGCTTGTCCGAGGAAAGTAGGAAAAGGTTGCAGCAGTGTAGGGATTGCACCAATCAGATTCTAAAAGCTGCTGTTGCAATTAATACTTCTGTTCTTGCTGAAATGGAAATTCCCGGTGCCTACATTGAGTCCTTGCCCAAGAATGGAAAGGCTTGTCTAGGGGATATAATCTATCGATACATAACGGCAGACCAGTTCTCGCCTGAATGTCTCCTTGATTGCCTGGATCTTTCAACAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGCTGAAGGACCATAAGAAACATCTAAGTTCAGCAAAATCCAGACGGTCTTGGGGTGGAAAGGTGAAGGGACTTGTTGCTGATGGTGAGAAGAACAAGAACAACTTTCTTGCCCAACGGGCTGAGACGCTTCTAGAAAGCTTGAAACACAGATTTCCAGGGCTCCCTCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCTTGGCCTTTAACATAATGGCCAGGATAGATGATGTCCTATATGTAGATGATAGCATAAAGCGGTGTGCAGCTGCAGATTCTCTCTCGTTGTTCAGCAGGGGAGGTTTTGGAGGCATGCCCATTCAGAAGCGATTCTCTCCTAGTCCCTTCTCAATTCAGCACACCCCATATGCCTCCCCATTTGCAACGCCAACATTTTGTTCCTCCACTCCTGTTACTGGGAGCCCTTGCAGTCCTGCAAGGATACATGATGTGAAAAGGAATGCTCCAAAGGAGGGTGCAGATTCGAAGACTGAAAAGTTGGCCACATCTGAGTTTGAGAGGGTTTGGTCATATGCCGGAAACCTCAGTGCAAGAAGAGCATCTGGCGATGCTCCAGAAAGAGACTGA
Predicted protein sequences of Glyma12g02620
>Glyma12g02620.1   sequence type=predicted peptide   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVSSEDGSDRCGSYSLSADVSESESCSSFSARRFDAEGASSSANLSPRPVAAHFNFPPAQVMLPVIGGKDVVVWDHKRDLDLSEQLHFAEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDSKDCDAYGRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLAEMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIANRIEAAIHVWRLKDHKKHLSSAKSRRSWGGKVKGLVADGEKNKNNFLAQRAETLLESLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSLFSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHDVKRNAPKEGADSKTEKLATSEFERVWSYAGNLSARRASGDAPERD*

>Glyma12g02620.2   sequence type=predicted peptide   gene model=Glyma12g02620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVSSEDGSDRCGSYSLSADVSESESCSSFSARRFDAEGASSSANLSPRPVAAHFNFPPAQVMLPVIGGKDVVVWDHKRDLDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKTMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLNMLDGFHDTQFWYVDRGIILGDSKDCDAYGRPSVRQEEKWWLPSPKLPPNGLSEESRKRLQQCRDCTNQILKAAVAINTSVLAEMEIPGAYIESLPKNGKACLGDIIYRYITADQFSPECLLDCLDLSTEHHTLDIANRIEAAIHVWRLKDHKKHLSSAKSRRSWGGKVKGLVADGEKNKNNFLAQRAETLLESLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSLFSRGGFGGMPIQKRFSPSPFSIQHTPYASPFATPTFCSSTPVTGSPCSPARIHDVKRNAPKEGADSKTEKLATSEFERVWSYAGNLSARRASGDAPERD*






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