Glyma12g02590 - SoyBase

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Report for Sequence Feature Glyma12g02590

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1696700
stop:	1699561
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41990	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:17527396-17528527 FORWARD LENGTH=297	SoyBase	E_val: 2.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_I1LPF5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPF5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5BPJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant hydroxyproline-rich glycoprotein n=1 Tax=Arabidopsis thaliana RepID=Q5BPJ9_ARATH	SoyBase	E_val: 5.00E-84	ISS

Expression Patterns of Glyma12g02590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02590

Paralog	Evidence	Comments
Glyma11g10300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g023200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g02590

Limit To All Plant Sequences

>Glyma12g02590.1   sequence type=CDS   gene model=Glyma12g02590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAAGAATGCACACGAAATCAGACTCGGAGGTGACGAGCAACAGCATGGAGCAGTCGTCGCCGGCGCGTTCTCCTCCGCGGCGGCCACTCTACTACGTCCAGAGTCCTTCAAACCACGACGTGGAGAAAATGTCCTACGGCTCAAGCCCCATGGGTTCCCCACACCACCATTTCCACTACTACCTCTCTTCCCCCATCCATCACTCTCGCGAATCCTCCACCTCTCGCTTCTCCGCTTCCCTCAAAAACCCTCGCAACTTCTCCTCCTCCTCCTCCTGGAAGAAGCTCCACCCTCACCCCAACCGCGACGTTGACCCCGACGACCATGACGACGCCGACCACCACCTCAAGCAGTCCTCCCGCAACCTCCGCTTGTACTTGTGGTTCTTCCTCCTCTTTCTTCTCCTTTTGACCCTCTTCTCTTTCATCCTCTGGGCCGCCAGCAAGACCTACAAGCCTCGAATCATTGTCAAGAGTATAGTGTTGGAGAACTTGTATGTTCAGTCAGGAAACGATGGAACTGGGGTACCAACTGATATGTTGTCGTTGAACTCAACGGTCAGAATATTGTACAGAAATCCTGCCACTTTCTTCGGCGTTCATGTCACTTCTACCCCTCTTCTCATTAGCTATTACCAGCTTGCAATTGCCTCTGGCCAGATGCAGAAGTTCTATCAATCGAGGAAGAGTCGGCGGAGTTTGGCTGTAGTGGTTTCAGGACACCAGATTCCTCTCTATGGTGGCGTGTCAGTTTTAGGGAATACTAAAGAGCATTTGGAGAGTGTTGCATTGCCACTGAACCTGACATTTGTAGTGAGATCAAGGGCCTTCATCTTGGGAAGATTAGTTAAGTCTAAATTCTTTCGAAGAATCAGATGTTCTGTCACTTTGCATGGCAACAAACTTGGAAAACATCTTAATTTAACGGATTCCTGTGTCTACAAGTGA

Predicted protein sequences of Glyma12g02590

Limit To All Plant Sequences

>Glyma12g02590.1   sequence type=predicted peptide   gene model=Glyma12g02590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGRMHTKSDSEVTSNSMEQSSPARSPPRRPLYYVQSPSNHDVEKMSYGSSPMGSPHHHFHYYLSSPIHHSRESSTSRFSASLKNPRNFSSSSSWKKLHPHPNRDVDPDDHDDADHHLKQSSRNLRLYLWFFLLFLLLLTLFSFILWAASKTYKPRIIVKSIVLENLYVQSGNDGTGVPTDMLSLNSTVRILYRNPATFFGVHVTSTPLLISYYQLAIASGQMQKFYQSRKSRRSLAVVVSGHQIPLYGGVSVLGNTKEHLESVALPLNLTFVVRSRAFILGRLVKSKFFRRIRCSVTLHGNKLGKHLNLTDSCVYK*

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