Glyma12g02580 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g02580

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1690413
stop:	1694712
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47670	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr1:17536834-17539486 REVERSE LENGTH=519	SoyBase	E_val: 8.00E-151	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_B9H1N8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysine/histidine transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H1N8_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233D310	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D310 related cluster n=1 Tax=unknown RepID=UPI000233D310	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g02580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02580

Paralog	Evidence	Comments
Glyma11g10281	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g023100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g02580

Limit To All Plant Sequences

>Glyma12g02580.2   sequence type=CDS   gene model=Glyma12g02580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGTGGCTGAAGAAGCTCAATATTTCAGATCAGAAATAGCTCTGTTGAATTTCTCGGATGCCACCTTCAAACCCCCACTTTCTCCTCTGTTGATACACATTGATCCTCTCCTACCCAATGGTCACACTTGTTCTGCATCAGAATCTGATCCATCACCCACTTCACAGCATCAGCAGGAGCAGCATCATCCAAAAGATGCGTGGCTTCCAATCACTGAATCCAGAAATGGAAATGCCTATTATGCAGCCTTCCATATTCTTAATTCCAACATTGGATTCCAGGCTCTCATGCTTCCCGTTGCCTTCGCTACTCTCGGTTGGGCATGGGGTACAGTATGTTTGTCACTAGCATTTGTTTGGCAGCTCTATGCTATATTTCTTCTTGTTCAGCTTCACGAATACGTCCCTGGAATTCGTCACAGCAGATACCTCTTCCTTGCTATGGCTGCCTTCGGAAAAAAGTTAGGGAAGGTGGGAGCATTATTCCCCGTAATGTACCTTTCAGGAGGCACATGCGTCATGCTAATCATCACCGGAGGTGGGACCATGAAACAATTATTCAAGACGCTTTGCGAAAACGATAATGGGAAAACATGTAATGCCCATGCACTTAGCGGGGCTGAGTGGTTCTTGGTGTTTACCTGTGTCGCCATTCTTATTGCACAGTTGCCCAACCTCAACTCAATGGCCATGGTTTCTCTCGTCGGCGCGGTTACCTCTATCACTTATTGCACCCTCTTTTGGGTTCTCTCTGTTAAGAAGGGTAAGCCTAACAACGTATCCTATAGCTCATCCCTGTCCCAAGAACACACACCAGTTGCTAAGATCAGTGACGTTCTCAATGCCATTGGAATCATTGTCCTAGCCTTCAGAGGGCATAATGTTTTGCTCGAAATACAGGGGACGCTGCCTTCAAATTTGGAACAAACATCCAAAATACCAATGCGAAGAGGAGTGAGCATGTCATATGTACTCATTTCCATGTGCGTGTTTCCCCTCGCAATTGCCGGATTCTGGGCCTATGGAAACCAGATTAACGATGGAGGATTGTTATATTCGTTTCCAGAATTCCACAAGAGGCAAATCACAAAATTCTCTATGGGTGCCATATATGTTCTAGTAATAATACATTGTTTAACCAGCTTTCAAATATATGCGATGCCTGTTTTTGACAACCTGGAGATAAGATACACGAGCATAAAGAATCAGAGATGTTCACCATTAGTGAGAACATGCATAAGATTATTCTTCGGGGGGCTGACATTTTTTATCTCAGTCACGTTCCCTTTCCTTCCAAGACTATCAACACTACTTGGAAGCATGACCCTTGTGCCTATCACATATGCATACCCCTGTTTCATGTGGTTATCCCTCAAGAAACCTCGTCCAAGAGGTATAATTTGCTGCTTCAACGTTGCACTCGGTTCTGTAGGGATGCTTCTCAGTGCTCTTTTGGTAGCTGCAGCTATTCGGACTCTAGCTCTCAATGGCCTTGATGCTAACTTCTTCAGACCATAA

Predicted protein sequences of Glyma12g02580

Limit To All Plant Sequences

>Glyma12g02580.2   sequence type=predicted peptide   gene model=Glyma12g02580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEVAEEAQYFRSEIALLNFSDATFKPPLSPLLIHIDPLLPNGHTCSASESDPSPTSQHQQEQHHPKDAWLPITESRNGNAYYAAFHILNSNIGFQALMLPVAFATLGWAWGTVCLSLAFVWQLYAIFLLVQLHEYVPGIRHSRYLFLAMAAFGKKLGKVGALFPVMYLSGGTCVMLIITGGGTMKQLFKTLCENDNGKTCNAHALSGAEWFLVFTCVAILIAQLPNLNSMAMVSLVGAVTSITYCTLFWVLSVKKGKPNNVSYSSSLSQEHTPVAKISDVLNAIGIIVLAFRGHNVLLEIQGTLPSNLEQTSKIPMRRGVSMSYVLISMCVFPLAIAGFWAYGNQINDGGLLYSFPEFHKRQITKFSMGAIYVLVIIHCLTSFQIYAMPVFDNLEIRYTSIKNQRCSPLVRTCIRLFFGGLTFFISVTFPFLPRLSTLLGSMTLVPITYAYPCFMWLSLKKPRPRGIICCFNVALGSVGMLLSALLVAAAIRTLALNGLDANFFRP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain