Glyma12g02570 - SoyBase

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Report for Sequence Feature Glyma12g02570

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1679749
stop:	1680174
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29450	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr1:10305981-10306406 REVERSE LENGTH=141	SoyBase	E_val: 4.00E-34	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_B9HQZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SAUR family protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HQZ7_POPTR	SoyBase	E_val: 5.00E-48	ISS
UniRef100_I1LPF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPF3_SOYBN	SoyBase	E_val: 6.00E-100	ISS

Expression Patterns of Glyma12g02570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02570

Paralog	Evidence	Comments
Glyma11g10270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g023000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g02570

Limit To All Plant Sequences

>Glyma12g02570.1   sequence type=CDS   gene model=Glyma12g02570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAGTTCCAAAAAGATCATCCAAATGGCTTGGAAGTGGCAGAAAGAGGTGACAAATTACCAAATGAAGAGAATCCTATGGCCAAAGACTCAAGAAAATGTAGCAAAAGCAGAGAAGAAGGGTCACTTTGTTGTGTATAGCTCAGATAAGAGGCGCTTTGTGCTTCCTTTGCTGTATTTGAACAACAAAATCTTCAGGGAGCTTTTCAAATTGGCAGAAGAGGAGTTTGGTCTCTCTAGCAACGTGCCCCTAACGTTGCCATGTGAAGCCACGTTAATAGAGTACGTAATAACGTTGATCCAGAGAAACGTAACTAAGGATCTGGAGGAAGCTGTGTTAATGTTCGTAGCTACTAGTCGATGCCAATCGCATGTTGATCTTCATCGTGAACGAACCAATCAACATTTGCTTTGCAGCTATTAA

Predicted protein sequences of Glyma12g02570

Limit To All Plant Sequences

>Glyma12g02570.1   sequence type=predicted peptide   gene model=Glyma12g02570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISSKKIIQMAWKWQKEVTNYQMKRILWPKTQENVAKAEKKGHFVVYSSDKRRFVLPLLYLNNKIFRELFKLAEEEFGLSSNVPLTLPCEATLIEYVITLIQRNVTKDLEEAVLMFVATSRCQSHVDLHRERTNQHLLCSY*

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