Glyma12g02550 - SoyBase

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Report for Sequence Feature Glyma12g02550

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1670873
stop:	1672933
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45970	AT	Annotation by Michelle Graham. TAIR10: expansin-like A1 \| chr3:16896238-16897189 FORWARD LENGTH=265	SoyBase	E_val: 9.00E-113	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_B9T775	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-expansin 1a, putative n=1 Tax=Ricinus communis RepID=B9T775_RICCO	SoyBase	E_val: 2.33E-156	ISS
UniRef100_I1LPF0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPF0_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma12g02550

Locus	Gene Symbol	Protein Name
	EXLA2	expansin-like A gene 2

Expression Patterns of Glyma12g02550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g02550

Paralog	Evidence	Comments
Glyma11g10240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g02550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g022800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g02550

Limit To All Plant Sequences

>Glyma12g02550.2   sequence type=transcript   gene model=Glyma12g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAACAGTTAGCACACAGAGAAACAGCTGTTTGGGATTGGCGCATAGATACGCAGGGTCGGTGAGTGAGTGAAGTCAGAAAGTGACCCCATTTAGTTTCATTTCATTCTTATCTGATACCAATGCCTTTTTGGAAAAATGCTGACCTGTGAGACCTTATATATATATACCTTGCTTTCTGAACCAACAAAACCAAACAACAAACATTCATGGCTTTCTTTATTTTCTCCTTCCTCTTCCTTCTTCTTGTTTCATCTTCCACTGCTTGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCAGTTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGCAGCAAAGAAGGTACCAGAGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCAAACAAATATTGAAGCTTGGCATTGCTGACATTGAATACAAGAGAGTACCTTGTGAATACAAAAAACAGAATTTAGCCGTTCGTGTTGAAGAATCAAGCAAGAAGCCAGAATACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACGGAGATAGTAGCCGTTGATGTGGCTCAGGTGTGTTGCAAGACATAAAACATTAGTATTACCAAATTATTTGTTATTTGGTTGAATAAAATTTGCTAACCGTTGCCTTGGTGGGTTACTATTATTTATTAGGTTGGGTCTTCAAACTGGAGCTTCATGAGCAGAAGCGACGGGGCAGTGTGGGACACAAGCAGGGTACCCCAAGGTGCATTGCAATTTAGGTTAGTGGTAACGGCAGGGTATGATGGCAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAAAATGGACTTATATATGATTCTGGCCTTCAGATAACAGACATTGCACAAGAGGGTTGCTCCCCCTGCGACGATGGAACCTGGTCATGATTCATTGCTTTGCTGCTGAAGAATAACTCACATATACACATACATATAGCCATAAATTTTATTAATATAATAGTATAGGCTCATAAAGCAACTTATAATACTAAGGAATCATGAGTAGCTTAATAAATTTGAAAAGCATTCTTATTTCTGAACCACTCGACTTCGTTCTTTATATTCTTTCTTCTTGTAAGTTGTAAGTTGTAACCAACCAAAATAATAGACTTTTCTTTTTGGAATATATGAATTACATTTTTACTTTTTTTT

Coding sequences of Glyma12g02550

Limit To All Plant Sequences

>Glyma12g02550.1   sequence type=CDS   gene model=Glyma12g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTTTATTTTCTCCTTCCTCTTCCTTCTTCTTGTTTCATCTTCCACTGCTTGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCAGTTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGCAGCAAAGAAGGTACCAGAGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCAAACAAATATTGAAGCTTGGCATTGCTGACATTGAATACAAGAGAGTACCTTGTGAATACAAAAAACAGAATTTAGCCGTTCGTGTTGAAGAATCAAGCAAGAAGCCAGAATACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACGGAGATAGTAGCCGTTGATGTGGCTCAGGTTGGGTCTTCAAACTGGAGCTTCATGAGCAGAAGCGACGGGGCAGTGTGGGACACAAGCAGGGTACCCCAAGGTGCATTGCAATTTAGGTTAGTGGTAACGGCAGGGTATGATGGCAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAAAATGGACTTATATATGATTCTGGCCTTCAGATAACAGACATTGCACAAGAGGGTTGCTCCCCCTGCGACGATGGAACCTGGTCATGA

>Glyma12g02550.2   sequence type=CDS   gene model=Glyma12g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTTTATTTTCTCCTTCCTCTTCCTTCTTCTTGTTTCATCTTCCACTGCTTGTGATCGCTGCTTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCAGTTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGCAGCAAAGAAGGTACCAGAGTGGTATTGACTGATCTTAATCACAATAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCAAACAAATATTGAAGCTTGGCATTGCTGACATTGAATACAAGAGAGTACCTTGTGAATACAAAAAACAGAATTTAGCCGTTCGTGTTGAAGAATCAAGCAAGAAGCCAGAATACTTAGCAATTAAATTTTTGTATCAAGGGGGACAAACGGAGATAGTAGCCGTTGATGTGGCTCAGGTGTGTTGCAAGACATAA

Predicted protein sequences of Glyma12g02550

Limit To All Plant Sequences

>Glyma12g02550.1   sequence type=predicted peptide   gene model=Glyma12g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFFIFSFLFLLLVSSSTACDRCLHQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVASLFKDGAVCGACFQIRCKNPTLCSKEGTRVVLTDLNHNNQTDFVLSSRAFAGMAQKGMGKQILKLGIADIEYKRVPCEYKKQNLAVRVEESSKKPEYLAIKFLYQGGQTEIVAVDVAQVGSSNWSFMSRSDGAVWDTSRVPQGALQFRLVVTAGYDGKWIWAKKVLPADWKNGLIYDSGLQITDIAQEGCSPCDDGTWS*

>Glyma12g02550.2   sequence type=predicted peptide   gene model=Glyma12g02550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFFIFSFLFLLLVSSSTACDRCLHQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVASLFKDGAVCGACFQIRCKNPTLCSKEGTRVVLTDLNHNNQTDFVLSSRAFAGMAQKGMGKQILKLGIADIEYKRVPCEYKKQNLAVRVEESSKKPEYLAIKFLYQGGQTEIVAVDVAQVCCKT*

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