SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12430 | AT | Annotation by Michelle Graham. TAIR10: Heat shock protein DnaJ with tetratricopeptide repeat | chr5:4028475-4034086 REVERSE LENGTH=1165 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| KOG0550 | KOG | Molecular chaperone (DnaJ superfamily) | JGI | ISS | |
| PTHR22904 | Panther | CHAPERONE BINDING PROTEIN | JGI | ISS | |
| PTHR22904:SF36 | Panther | HSC70-INTERACTING PROTEIN-RELATED | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7JQK6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7JQK6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D30C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D30C related cluster n=1 Tax=unknown RepID=UPI000233D30C | SoyBase | E_val: 0 | ISS |
|
Glyma12g02420 not represented in the dataset |
Glyma12g02420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g10100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g021400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02420.1 sequence type=CDS gene model=Glyma12g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAACGCCAGTGACGATATTAACAGGTTTTCGAATCCAAACGCGAACGCGAACGCAAACGCAAACGCAACCGCGACGACCTCGACCTCAAGTTTCACGTTCAGTACCCCTTCCGTTTCGGGCCTGTCCCGGCCCAGATTCGTGAAGGTCCGCAAGCCCAACAACGCCCCCGCCTTCAATCCATTCCGCCACGGTGCTGCCGCCACCAATGCCGCATTCGCCACCACCGATTTCGCTTCACTAATCGGCGATCCGTTCAGGGATCTCAAAATCGGTGAGGGTTTCGACGCCAAAGGTGAGTTCGCCTTTGCCACTAATGCTTCTTCACGTGTTGATGAAAACTCGGTCTCTGAACAGATCAACAACTTGAAGATTGTAACCGATAACGAATCGAACGAATCGGACCTACGGAATGAGCTGATGAAGAAATTAAGCATTAAAGAAGGAGGAGGTAGTAATGCTGCAGTTGCTGAGAACTCAGCACACGAAGTTATATATCAATTGAAGAATCTGAATGTGAATGACGCTATTGGTAGTAATGTCCACAAGAGTGCAGTTGATGTTAAACCTAGTTTGGAAAATGTGACAACGTTTCGAAATCGTGAAACGGAAGCAGCAGATTTGTTGAGGAAATTGGAGATGTTAAACCTAGTTAAAGAGAAGGAGGATTGTGTTGAACCGAACTTGTGTAATCCTTTTGTGGAGGGAATCCACCCAAGAGTTGCAAGTGGTGGCGCTCAAGTTGCTGCTTCGGCTTCGGCTTCTGCTTCTGTGTTCTTTCAGCCTGCTGGAGTTGGCAAGAGGGAGGAATTTGTGTTTACTGGTAAACAAGATATTTCAAGTTCATCTTTTGTTGAGTTTAACACTCCTCAACCAAAAATTGGCAAAGAAGGAAAACTTAAGGAAAAAGGGAGTAAAGTGAGAATAAATAAAAGTAGAGAAAAGCAGAAGCATTATAGCTCGGCCCAGCCGTGGTATGGACAGGGTTTTGTTTTGAAAGAAAGTGTTCCCCAGGACGAACCACAGGGTTCACCAATGGATGTGTCACCGTATCAGGAAAAGCTGTCTGAAAATGAAAGATCGAGGGAAGATTCTTTGGCATCCAATGAGTCATTTAGTGTTGATAACAACAATATTGTTAATGATTCAGAACCAACATCTTTTATTGATCCCATTGATGAAGATCTAATTGCCGCGGCAAAGAGCTTGGATATAAATGGGGGTGATGTTGCACACAGAGACACAAAGGAGGAAAGTTCAGAGGATCAAATGCGTGAAAATAGTTGTGTTGAAGACCCAAAGGACGAGTCAATTTCCGGGGTTGAAACTGAAAGCTTTAAGTCTGCCAATGATGAAGTGGACATAACTAGTGATGTGACTGGTGTATCAGCAGAAACTGGAGCCCATGATAGTGATAGAATGTTGCATCTTGAAAGTGCTTTGAGTTCAAGAAATGTAAATGGGTCTGGCTTCACATTTGCTGCTGCTTCTTCGACTGAAGCTCAATCATGTAGCCCAAAACGTCTTCACAAAAAGAAAAATGTTGGTCACGATTCTTACAACTACACACCAAACATAAAGGTTCCTTATTCATCAACTTCAGTGGCATTTTCTCCATTTTCTGGGACTTCATCTCTTTTCACACCAGGGCAAAGTTTAAAACCCAAAGTATCCTCTCCTCCGCCCAAAACAAGTGATTCTGATGAGAATCAGGAGAAGGAGATAAAGGAGGCTGAGGAAGCCTGTGAACGGTGGAGGCTCCGAGGAAACCAAGCCTATAAAAAGGGGGATCTGTCTACGGCTGAGAATTGTTACAAACAAGGACTTAGTTGTATATCTAAAGAAGCATCTCGTAGCTGTCTCAGGGCTTTGCTGCTATGTTATAGCAACCTTGCTGCCACACACATGTCTCTTGGTAGGATGAGAGATGCACTAGAAGATTGTAAGATGGCTGCTGAAATAGATCAAAATTTCCTCAAGGTGCAACTTAGAGCTGCAAATTGTTACCTTGCTCTGGGGGAAGTTGAAGGTGCATCACAATATTTTAAAAGGTGCTTGCAATCAGGAACTAATGTTTGTGTGGATCGAAAAATTGCTGTGGAAGCCTCTGATGGCTTACAAAAGGCACAGAAAGTATCAGATGTCATCAATCATTCTGCTCAGCTTTTGCAAAGAAGAACAGCCTCTTATGCAGAGAGAGCATTAGAACATATTAATGAGGCGTTAATAATAAGTTCATACTCTGAAAAATTGCTTGAAATGAAAGCAGAGGCTCTCCTAATGCTTTGTAGATATGAGGAGGTGATTCAACTGTGTGACAAGACCCTTGATTCTGCTGAAAAGAATGCCTGTCCTTTGGATGCTGGTTGCAAAGTCACGGATCTTGATAATTCACAACTCTCAAAAGGTTTCTACTTCAGAATATGGCGATGCTCAATGATGCTTAAAGCATACATTCACCTAGGAAAATTTGAAGAGGGTCTTTCTTTGCTGGAGCAACAAGAGGAAAAGGTGTCTGCCATAAACAAGAGTGGAAGCAAGGTTTTGGATTCACTCACACCTCTTGCTGCCATCATACGTGAGCCCTTGCATCATAAGACTGCAGGGAATGCAGCATTTCAGGCTGGAAGGCATGCAGAAGCTGTTGAATACTATACATCTGCTTTGTCATGTAATGTGGAGTCTCGTCCATTTGCAGCTGTCTGTTATTGTAATCGTGCTGCTGCGTATAAAGCTTTAGGTCAAATAACTGATGCTATTGCAGATTGCAGTCTAGCTATAGCTCTTGATGGAAATTATTTGAAGGCACTTTCTAGACGTGCAACTCTGTTTGAGATGATCAGAGATTATGCCCAAGCAGCCAGTGATCTTAGGAGGCTTCTCTCTCTTCTCAGTAAGGGGGTGGAGGACAATGCCAATCAGCTTGGAATATCTGATAAATCAATTAATTATACAAATGATTTGAAACAAAATCGTGTTCGTCTTTTGGAAATGGAAGAGGAAGCCAGAAAGGAGATCCCTCTTGATATGTACCTCATTTTGGGAGTTGAACCATCTGTTTCGATATCTGAAATCAAGAAGGCCTATCGGAAAGCTGCACTTAGACACCACCCAGACAAGGCTGGCCAGTCTTTGACCAAAAATGACAATGGAGATGATCAGATATGGAAGGTTATTGCTGAAGAAGTACACGGGGATGTTGATCAGCTTTTCAAAATAATTGGGGAGGCATATGCCGTGCTGTCAGACCCTGCCAAGCGGGCACGTTATGATGCAGAAGAAGAAATGAGGAATTCCCAAAAGAGACGCCATGGACCTATAGGTAAAAATAGTGTGGATGCCCAGTATTACCCATTTGAACAAAGCAACAGGAGACAGTGGAGAGAAGTTAATAGATCATATGGTAATTCGTCTTTTCGAGGTTATGAACCTGGCCGATCGAGCAGGAAATAA
>Glyma12g02420.1 sequence type=predicted peptide gene model=Glyma12g02420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENASDDINRFSNPNANANANANATATTSTSSFTFSTPSVSGLSRPRFVKVRKPNNAPAFNPFRHGAAATNAAFATTDFASLIGDPFRDLKIGEGFDAKGEFAFATNASSRVDENSVSEQINNLKIVTDNESNESDLRNELMKKLSIKEGGGSNAAVAENSAHEVIYQLKNLNVNDAIGSNVHKSAVDVKPSLENVTTFRNRETEAADLLRKLEMLNLVKEKEDCVEPNLCNPFVEGIHPRVASGGAQVAASASASASVFFQPAGVGKREEFVFTGKQDISSSSFVEFNTPQPKIGKEGKLKEKGSKVRINKSREKQKHYSSAQPWYGQGFVLKESVPQDEPQGSPMDVSPYQEKLSENERSREDSLASNESFSVDNNNIVNDSEPTSFIDPIDEDLIAAAKSLDINGGDVAHRDTKEESSEDQMRENSCVEDPKDESISGVETESFKSANDEVDITSDVTGVSAETGAHDSDRMLHLESALSSRNVNGSGFTFAAASSTEAQSCSPKRLHKKKNVGHDSYNYTPNIKVPYSSTSVAFSPFSGTSSLFTPGQSLKPKVSSPPPKTSDSDENQEKEIKEAEEACERWRLRGNQAYKKGDLSTAENCYKQGLSCISKEASRSCLRALLLCYSNLAATHMSLGRMRDALEDCKMAAEIDQNFLKVQLRAANCYLALGEVEGASQYFKRCLQSGTNVCVDRKIAVEASDGLQKAQKVSDVINHSAQLLQRRTASYAERALEHINEALIISSYSEKLLEMKAEALLMLCRYEEVIQLCDKTLDSAEKNACPLDAGCKVTDLDNSQLSKGFYFRIWRCSMMLKAYIHLGKFEEGLSLLEQQEEKVSAINKSGSKVLDSLTPLAAIIREPLHHKTAGNAAFQAGRHAEAVEYYTSALSCNVESRPFAAVCYCNRAAAYKALGQITDAIADCSLAIALDGNYLKALSRRATLFEMIRDYAQAASDLRRLLSLLSKGVEDNANQLGISDKSINYTNDLKQNRVRLLEMEEEARKEIPLDMYLILGVEPSVSISEIKKAYRKAALRHHPDKAGQSLTKNDNGDDQIWKVIAEEVHGDVDQLFKIIGEAYAVLSDPAKRARYDAEEEMRNSQKRRHGPIGKNSVDAQYYPFEQSNRRQWREVNRSYGNSSFRGYEPGRSSRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
