SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51450 | AT | Annotation by Michelle Graham. TAIR10: TRAUCO | chr1:19074399-19076220 FORWARD LENGTH=509 | SoyBase | E_val: 5.00E-161 | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0060776 | GO-bp | Annotation by Michelle Graham. GO Biological Process: simple leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0080182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K4 trimethylation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0048188 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Set1C/COMPASS complex | SoyBase | N/A | ISS |
| GO:0031490 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin DNA binding | SoyBase | N/A | ISS |
| KOG2626 | KOG | Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 | JGI | ISS | |
| PTHR10598 | Panther | TRITHORAX PROTEIN ASH2 | JGI | ISS | |
| PF00622 | PFAM | SPRY domain | JGI | ISS | |
| UniRef100_G7JRM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Set1/Ash2 histone methyltransferase complex subunit ASH2 n=1 Tax=Medicago truncatula RepID=G7JRM6_MEDTR | SoyBase | E_val: 4.00E-180 | ISS |
| UniRef100_I1LPA8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPA8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g02280 not represented in the dataset |
Glyma12g02280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g09940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g020200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02280.1 sequence type=CDS gene model=Glyma12g02280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCTTCCTCCATCCTTATCGGAGCCGCCCTCACTCTCCGACTCATTCTCGCCGTTAAACCCAGCCCTAGCCATGGATAGTCTTCAAGCCACTTACAAAGACGAAGAAGATGAAGAAGACGAGCCGCAGCCTCAACCACCACCAACCACCGCCGATTCACCTGAAGCCCCTCCCGCCACCACCAGCACACCCTCCGACACCCCAACCGAACCCCCGAACGACGCCCGATCGGAGCCCGAGCCCTCCGAAGATCTCTCCGAGGACGAGGCCGCCTCCGACGGCTCCAAGAAATCCCCCAAATCCGGCCGCGAAGAAGGCGACGCCTCCGACGAGGACCCACCGCCGAAGAAGCAGAAGCAGCTCTCCTCTCTGACGGAGGCAACGAAGGAGGACTTGGTAGCGCCGCAGGATGGCACCAACAACGCGGCGGCGACGCCGGCAACAAATGGCGCGGCGCCGAAGAAATCGAAAAAGAAAAACAACAACGTGTGGGCGACGAAGTCGACGCGGAAGGGGAAGAAGAAAACGAATCGGAACAACAACAACAACAACAGCAACAACAACAACAACCACAACCACCACGCGAACGGCGAGGACAACGTGCTGATAACGCCGGTGCCGCGGTTCCCGGACAAGAGCGACGACACGGAGGACATGAAGATTTGCCTCTCGAAGGTGTACAAAGCGGAGAAGGTGGAATTGAGCGAGGACAGAATGAGCGCGGGGAGCACCAAGGGTTACAGAATGGTTAGGGCCACGCGCGGGGTGGTGGAAGGCGCGTGGTACTTTGAGATTAGGGTTGTGAAGTTGGGAGAGAGTGGGCACACGCGCCTCGGGTGGTCGACTGAGAAGGGTGATTTGCAGGCGCCGGTTGGGTACGACGGGAATAGCTTTGGGTATAGGGATATTGATGGGAGTAAGATTCATAAGGCTCTTAGGGAGAAGTATGGAGAGGAAGGGTACAAGGAAGGGGATGTTATTGGTTTCTATATCAATTTGCCTGGTGGGGAACAGTATGCCCCTAAATCATCTCAATTGGTTTGGTATAAGGGCCAGAGATATGTTTATGCACAAGATTCTAAGGAAGATCCACCCAAACTAGTGCCTGGAAGTGAGATATCATTCTTTAAAAATGGCATATGCCAAGGTGTAGCTTTCAAGGATCTTCACGGTGGTCGTTACTATCCTGCTGCTTCAATGTTTACTCTCCCCAATGAACCAAACTGCACGGTGAAGTTCAACTTTGGTCCCGACTTTGAGTGTTTTCCTGAGGATTTCAATGAACGGCCAATTCCCAGGCCAATGAGTGAAGTTCCTTATCTTGGTTTTGACAATAAAGTTGAAAATGAAGAGTCTAACGAGAAGAAATCCCAGAAAGAGTGA
>Glyma12g02280.1 sequence type=predicted peptide gene model=Glyma12g02280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLPPSLSEPPSLSDSFSPLNPALAMDSLQATYKDEEDEEDEPQPQPPPTTADSPEAPPATTSTPSDTPTEPPNDARSEPEPSEDLSEDEAASDGSKKSPKSGREEGDASDEDPPPKKQKQLSSLTEATKEDLVAPQDGTNNAAATPATNGAAPKKSKKKNNNVWATKSTRKGKKKTNRNNNNNNSNNNNNHNHHANGEDNVLITPVPRFPDKSDDTEDMKICLSKVYKAEKVELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIRVVKLGESGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKIHKALREKYGEEGYKEGDVIGFYINLPGGEQYAPKSSQLVWYKGQRYVYAQDSKEDPPKLVPGSEISFFKNGICQGVAFKDLHGGRYYPAASMFTLPNEPNCTVKFNFGPDFECFPEDFNERPIPRPMSEVPYLGFDNKVENEESNEKKSQKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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