SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19440 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326 | SoyBase | E_val: 4.00E-166 | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0046482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NAD) activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1502 | KOG | Flavonol reductase/cinnamoyl-CoA reductase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF9 | Panther | NAD(P)H STEROID DEHYDROGENASE-RELATED | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_C6TE86 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TE86_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JRN6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase n=1 Tax=Medicago truncatula RepID=G7JRN6_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma12g02250 not represented in the dataset |
Glyma12g02250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g019900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02250.1 sequence type=CDS gene model=Glyma12g02250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGCAACTCAGGAAAAGTGGTGTGTGTGACTGGTGCTTCTGGTTTCATTGCTTCATGGATCATCAAACTGCTTCTCCAACGTGGTTACACTGTCAGGGCCACTGTTCGCGACCCATCTAAACCCGAAAAGGTTGATCACTTGCTCAAACTTGATGGTGCAAAGGAGAGGCTACATCTCTTTAAGGCAGATCTGCTGGAAGAAGGTTCCTTTGACTCTGCTTTTGAGGGTTGTGATGGTGTCTTTCATACTGCTTCACCCGTTCATTTCATTGTTACTGATCCACAGAATCAGTTAATTGATCCAGCGATTAAAGGAACCCTTAACGTTGTTAAATCATGTGCCAAATCGCCATCTGTGAAACAAGTTATTTTAACTTCTTCTGTTGCTGCCGTTTTATATAATGGAAGGCCTCGTACCCCCGAGGTTGTAGTTGACGAGACTTGGTTTTCGGATCCAGACTTCTTAAGGGAAAATGAGAGGTGGTATGCATTTGCAAAGACTTCGGCAGAGGATGCTGCCAGGAAATTTTTAAGCGAATACGACATTAAGTTGGTTGTTATTAACCCATCAATGTCCATAGGGCCTCTCTTGCAACCAGAGCTGAATGCAAGTTCTTCTTCAATTTTAAACCTAATCAATGGTTCACCAACGTTTTCAAATAATAGTTTTGGGTGGATCAATGTGAAAGATGTTGCAAACGCGCATATTCAAGCATATGAGATTGATTCAGCTAGTGGAAGATATTGTCTGGTTGAAAGAGTGATACACTTCTCCGAACTTGCAAAAATTTTACGTGATATGTACCCAACTTTACAGATTCCAGACAAGTGTGAAGACGATGAGCCTTTTATGCCAACATTTCAGGTTTCCAAAGAAAAGGCAAAGAGCTTGGGAGTTGAATTTATTCCCTTGGAAGTGAGCCTCAGGGAGACAGTTGAAAGTTTAAAAGAAAAGAAGTTTGTGGACTTCTAG
>Glyma12g02250.1 sequence type=predicted peptide gene model=Glyma12g02250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSNSGKVVCVTGASGFIASWIIKLLLQRGYTVRATVRDPSKPEKVDHLLKLDGAKERLHLFKADLLEEGSFDSAFEGCDGVFHTASPVHFIVTDPQNQLIDPAIKGTLNVVKSCAKSPSVKQVILTSSVAAVLYNGRPRTPEVVVDETWFSDPDFLRENERWYAFAKTSAEDAARKFLSEYDIKLVVINPSMSIGPLLQPELNASSSSILNLINGSPTFSNNSFGWINVKDVANAHIQAYEIDSASGRYCLVERVIHFSELAKILRDMYPTLQIPDKCEDDEPFMPTFQVSKEKAKSLGVEFIPLEVSLRETVESLKEKKFVDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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