Glyma12g02240 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g02240): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g02240): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g02240

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1381949
stop:	1385950
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g02240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G51410	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr1:19059885-19061424 FORWARD LENGTH=325	SoyBase	E_val: 4.00E-176	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NAD) activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B9GEZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl CoA reductase-like protein n=2 Tax=Populus trichocarpa RepID=B9GEZ1_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1LPA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LPA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g02240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g02240 not represented in the dataset	Glyma12g02240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g02240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g019800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g02240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g02240

Limit To All Plant Sequences

>Glyma12g02240.3   sequence type=transcript   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAAAGGCAAAGGCAATTCACATTTGAGTATTTGGTCAAAGACAGGGCTCTATATAATGGGATGCAAGCGAACACCGTTGAAAAGAAAGTTGAAGAATATGAGCAGCAGTGCAGGGAAGTTGGTGTGTGTCACCGGTGCTGCCGGTTATATTGCTTCATGGATTGTCAAGTTCCTACTTGAACGTGGTTACACTGTCAGGGCCACTGTTCGAAACCCAAATGATCACACGAAGGTAGAACATTTGCTAAAACTTGAAGGTGCAAAGGAGAGACTGCACCTTTTTAAGGCAGATCTTTTGGGTGAAAATTCTTTTGACTCCATTGTTGAGGGCTGTGATGGCGTCTTTCATACTGCTTCTCCTTTTATTATCAACGTCAAAGACCCACAGGCTGACCTACTTGACCCAGCAGTGAAGGGAACTCTTAACGTTCTTAAATCATGTGTAAAATCGCCATCTGTGAAACGAGTCATCTTAACATCTTCTGTGGCTGCAGTTGCATATAATAAAAGGCCTAAAAGTCCTGAAGTTGTAGTTGATGAAACCTGGTGGTCTGATCCAGATTACTGTAGGGAATTAAAGCTGTGGTATTTACTTTCAAAGACTTTGGCTGAAGATGCTGCCTGGAAATTTGCCAAAGAAAACGACCTTGACTTGGTTGTTGTTAACCCAGCAATGGTTGTAGGGCCTCTTTTGCAAGCAGAGCTTAACACTAGTGCTGCTATTATTTTAAACCTAATAAATGGTTCAGAAACTTTTTCAAATGATACATATGGATGGATCAATGTGAAAGATGTTGCAAACGCCCATATTCAGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGAGTGGCACACTACTCTGAACTCGCCAGGATTTTACGTGATCAGTACCCGACATATCAAATTCCAGAAAAGTAAGTTTATTTATTTCTGTAATTCCTTCAATGCTTGTAAATAATATTATATGAATTCGGATTCCCATTTAGTGAATGCTTTTCTGGTTTGTCTGCAACTTGATTCAATGCTGAAAATGAGAAGATTAAATAAACATTGGACTTGCTGTAGCTATGTTTGTTTGATGAATGAATTCAAAAGTACACACTAATTCTACACTTTTTTCCCCCGTCTCAATGTAAAATGACCTCATATCTTTTAGCTAGCCTAGGATATTTAATTATTTTGAAGCACTAATTATCTCTTG

>Glyma12g02240.4   sequence type=transcript   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTCAAAGACAGGGCTCTATATAATGGGATGCAAGCGAACACCGTTGAAAAGAAAGTTGAAGAATATGAGCAGCAGTGCAGGGAAGTTGGTGTGTGTCACCGGTGCTGCCGGTTATATTGCTTCATGGATTGTCAAGTTCCTACTTGAACGTGGTTACACTGTCAGGGCCACTGTTCGAAACCCAAATGATCACACGAAGGTAGAACATTTGCTAAAACTTGAAGGTGCAAAGGAGAGACTGCACCTTTTTAAGGCAGATCTTTTGGGTGAAAATTCTTTTGACTCCATTGTTGAGGGCTGTGATGGCGTCTTTCATACTGCTTCTCCTTTTATTATCAACGTCAAAGACCCACAGGCTGACCTACTTGACCCAGCAGTGAAGGGAACTCTTAACGTTCTTAAATCATGTGTAAAATCGCCATCTGTGAAACGAGTCATCTTAACATCTTCTGTGGCTGCAGTTGCATATAATAAAAGGCCTAAAAGTCCTGAAGTTGTAGTTGATGAAACCTGGTGGTCTGATCCAGATTACTGTAGGGAATTAAAGGTATGTGTTTTCTTTTTCCTAATCCATATTCAAAAGTTGCAATTGAATAACACGTTTTCCATATAAACATCCATTTTCTAATGTATTTGTTCCGATGAGCAG

>Glyma12g02240.5   sequence type=transcript   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCATCCACTCCATGATCTTATGCTGCAATTGAATTCTAATATCAGCTTTAATTCTCTGCATCTGAGTTACATTACAATTTACATTATGATGATGTATTCCAATTTCCAAACCAAATCCAACTCAACTGCTTTTCGGTCTCAAGTGAAATTTAAAAGGGAAACAGAATATATTATGTGCATGCCGGACAAGAATTGTCGTGTTGTTTTACAAAATATATGATTGATTTGATTGATGCAGGTTCAGAAACTTTTTCAAATGATACATATGGATGGATCAATGTGAAAGATGTTGCAAACGCCCATATTCAGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGAGTGGCACACTACTCTGAACTCGCCAGGATTTTACGTGATCAGTACCCGACATATCAAATTCCAGAAAAGTCTGCAGACGATAAGCCTTATGTACCAACATTTCAGGTTTCCAAAGAAAAGGCAAAGACCTTGGGGATTGAATTTATTCCTTTGGAAGTGAGTCTTAGAGAGACAGTGGAAACTTTGAAAGAAAAGAACTTTGCCAACTTTTAGTCTCTGATATCTCTGCTTGATCAGGAGTGAACACGTTGAGAATCTCAACGGTGTTTCGTTTGTGGTTCTGGTTTTAGAATCTCATTGCTTGAAAATAAACTATTGTACTGAAATGTCAAGCTTGTGTGTTGTAATAAAACAAGATTAATTGTTGGTTTTATTTCGGTTTGTACTCATGAAGGAAACCAACGTGTGGTATAAAAAGATAATAATTAAGTATCAGGCTATTTCTAGTCCAAATATATTCTTGTCAATTACTACAATAGCTATTCCGACTTATAAGAATATTAA

Coding sequences of Glyma12g02240

Limit To All Plant Sequences

>Glyma12g02240.1   sequence type=CDS   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGCAAGCGAACACCGTTGAAAAGAAAGTTGAAGAATATGAGCAGCAGTGCAGGGAAGTTGGTGTGTGTCACCGGTGCTGCCGGTTATATTGCTTCATGGATTGTCAAGTTCCTACTTGAACGTGGTTACACTGTCAGGGCCACTGTTCGAAACCCAAATGATCACACGAAGGTAGAACATTTGCTAAAACTTGAAGGTGCAAAGGAGAGACTGCACCTTTTTAAGGCAGATCTTTTGGGTGAAAATTCTTTTGACTCCATTGTTGAGGGCTGTGATGGCGTCTTTCATACTGCTTCTCCTTTTATTATCAACGTCAAAGACCCACAGGCTGACCTACTTGACCCAGCAGTGAAGGGAACTCTTAACGTTCTTAAATCATGTGTAAAATCGCCATCTGTGAAACGAGTCATCTTAACATCTTCTGTGGCTGCAGTTGCATATAATAAAAGGCCTAAAAGTCCTGAAGTTGTAGTTGATGAAACCTGGTGGTCTGATCCAGATTACTGTAGGGAATTAAAGCTGTGGTATTTACTTTCAAAGACTTTGGCTGAAGATGCTGCCTGGAAATTTGCCAAAGAAAACGACCTTGACTTGGTTGTTGTTAACCCAGCAATGGTTGTAGGGCCTCTTTTGCAAGCAGAGCTTAACACTAGTGCTGCTATTATTTTAAACCTAATAAATGGTTCAGAAACTTTTTCAAATGATACATATGGATGGATCAATGTGAAAGATGTTGCAAACGCCCATATTCAGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGAGTGGCACACTACTCTGAACTCGCCAGGATTTTACGTGATCAGTACCCGACATATCAAATTCCAGAAAAGTCTGCAGACGATAAGCCTTATGTACCAACATTTCAGGTTTCCAAAGAAAAGGCAAAGACCTTGGGGATTGAATTTATTCCTTTGGAAGTGAGTCTTAGAGAGACAGTGGAAACTTTGAAAGAAAAGAACTTTGCCAACTTTTAG

>Glyma12g02240.3   sequence type=CDS   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGCAAGCGAACACCGTTGAAAAGAAAGTTGAAGAATATGAGCAGCAGTGCAGGGAAGTTGGTGTGTGTCACCGGTGCTGCCGGTTATATTGCTTCATGGATTGTCAAGTTCCTACTTGAACGTGGTTACACTGTCAGGGCCACTGTTCGAAACCCAAATGATCACACGAAGGTAGAACATTTGCTAAAACTTGAAGGTGCAAAGGAGAGACTGCACCTTTTTAAGGCAGATCTTTTGGGTGAAAATTCTTTTGACTCCATTGTTGAGGGCTGTGATGGCGTCTTTCATACTGCTTCTCCTTTTATTATCAACGTCAAAGACCCACAGGCTGACCTACTTGACCCAGCAGTGAAGGGAACTCTTAACGTTCTTAAATCATGTGTAAAATCGCCATCTGTGAAACGAGTCATCTTAACATCTTCTGTGGCTGCAGTTGCATATAATAAAAGGCCTAAAAGTCCTGAAGTTGTAGTTGATGAAACCTGGTGGTCTGATCCAGATTACTGTAGGGAATTAAAGCTGTGGTATTTACTTTCAAAGACTTTGGCTGAAGATGCTGCCTGGAAATTTGCCAAAGAAAACGACCTTGACTTGGTTGTTGTTAACCCAGCAATGGTTGTAGGGCCTCTTTTGCAAGCAGAGCTTAACACTAGTGCTGCTATTATTTTAAACCTAATAAATGGTTCAGAAACTTTTTCAAATGATACATATGGATGGATCAATGTGAAAGATGTTGCAAACGCCCATATTCAGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGAGTGGCACACTACTCTGAACTCGCCAGGATTTTACGTGATCAGTACCCGACATATCAAATTCCAGAAAAGTAA

>Glyma12g02240.4   sequence type=CDS   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGCAAGCGAACACCGTTGAAAAGAAAGTTGAAGAATATGAGCAGCAGTGCAGGGAAGTTGGTGTGTGTCACCGGTGCTGCCGGTTATATTGCTTCATGGATTGTCAAGTTCCTACTTGAACGTGGTTACACTGTCAGGGCCACTGTTCGAAACCCAAATGATCACACGAAGGTAGAACATTTGCTAAAACTTGAAGGTGCAAAGGAGAGACTGCACCTTTTTAAGGCAGATCTTTTGGGTGAAAATTCTTTTGACTCCATTGTTGAGGGCTGTGATGGCGTCTTTCATACTGCTTCTCCTTTTATTATCAACGTCAAAGACCCACAGGCTGACCTACTTGACCCAGCAGTGAAGGGAACTCTTAACGTTCTTAAATCATGTGTAAAATCGCCATCTGTGAAACGAGTCATCTTAACATCTTCTGTGGCTGCAGTTGCATATAATAAAAGGCCTAAAAGTCCTGAAGTTGTAGTTGATGAAACCTGGTGGTCTGATCCAGATTACTGTAGGGAATTAAAGGTATGTGTTTTCTTTTTCCTAATCCATATTCAAAAGTTGCAATTGAATAACACGTTTTCCATATAA

>Glyma12g02240.5   sequence type=CDS   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGATTTGATTGATGCAGGTTCAGAAACTTTTTCAAATGATACATATGGATGGATCAATGTGAAAGATGTTGCAAACGCCCATATTCAGGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAGTTGAGAGAGTGGCACACTACTCTGAACTCGCCAGGATTTTACGTGATCAGTACCCGACATATCAAATTCCAGAAAAGTCTGCAGACGATAAGCCTTATGTACCAACATTTCAGGTTTCCAAAGAAAAGGCAAAGACCTTGGGGATTGAATTTATTCCTTTGGAAGTGAGTCTTAGAGAGACAGTGGAAACTTTGAAAGAAAAGAACTTTGCCAACTTTTAG

Predicted protein sequences of Glyma12g02240

Limit To All Plant Sequences

>Glyma12g02240.1   sequence type=predicted peptide   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCKRTPLKRKLKNMSSSAGKLVCVTGAAGYIASWIVKFLLERGYTVRATVRNPNDHTKVEHLLKLEGAKERLHLFKADLLGENSFDSIVEGCDGVFHTASPFIINVKDPQADLLDPAVKGTLNVLKSCVKSPSVKRVILTSSVAAVAYNKRPKSPEVVVDETWWSDPDYCRELKLWYLLSKTLAEDAAWKFAKENDLDLVVVNPAMVVGPLLQAELNTSAAIILNLINGSETFSNDTYGWINVKDVANAHIQAYEIASASGRYCLVERVAHYSELARILRDQYPTYQIPEKSADDKPYVPTFQVSKEKAKTLGIEFIPLEVSLRETVETLKEKNFANF*

>Glyma12g02240.3   sequence type=predicted peptide   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCKRTPLKRKLKNMSSSAGKLVCVTGAAGYIASWIVKFLLERGYTVRATVRNPNDHTKVEHLLKLEGAKERLHLFKADLLGENSFDSIVEGCDGVFHTASPFIINVKDPQADLLDPAVKGTLNVLKSCVKSPSVKRVILTSSVAAVAYNKRPKSPEVVVDETWWSDPDYCRELKLWYLLSKTLAEDAAWKFAKENDLDLVVVNPAMVVGPLLQAELNTSAAIILNLINGSETFSNDTYGWINVKDVANAHIQAYEIASASGRYCLVERVAHYSELARILRDQYPTYQIPEK*

>Glyma12g02240.4   sequence type=predicted peptide   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCKRTPLKRKLKNMSSSAGKLVCVTGAAGYIASWIVKFLLERGYTVRATVRNPNDHTKVEHLLKLEGAKERLHLFKADLLGENSFDSIVEGCDGVFHTASPFIINVKDPQADLLDPAVKGTLNVLKSCVKSPSVKRVILTSSVAAVAYNKRPKSPEVVVDETWWSDPDYCRELKVCVFFFLIHIQKLQLNNTFSI*

>Glyma12g02240.5   sequence type=predicted peptide   gene model=Glyma12g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLIDAGSETFSNDTYGWINVKDVANAHIQAYEIASASGRYCLVERVAHYSELARILRDQYPTYQIPEKSADDKPYVPTFQVSKEKAKTLGIEFIPLEVSLRETVETLKEKNFANF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain