SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34980 | AT | Annotation by Michelle Graham. TAIR10: phosphatidylinositolglycan synthase family protein | chr2:14748967-14749878 FORWARD LENGTH=303 | SoyBase | E_val: 9.00E-138 | ISS |
| GO:0006506 | GO-bp | Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0000506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0017176 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity | SoyBase | N/A | ISS |
| KOG3059 | KOG | N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis | JGI | ISS | |
| PTHR12982 | Panther | PHOSPHATIDYLINOSITOL GLYCAN, CLASS C | JGI | ISS | |
| PF06432 | PFAM | Phosphatidylinositol N-acetylglucosaminyltransferase | JGI | ISS | |
| UniRef100_G7J5H5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol N-acetylglucosaminyltransferase subunit C n=1 Tax=Medicago truncatula RepID=G7J5H5_MEDTR | SoyBase | E_val: 3.00E-169 | ISS |
| UniRef100_I1LPA0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPA0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma12g02220 not represented in the dataset |
Glyma12g02220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g019600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02220.1 sequence type=CDS gene model=Glyma12g02220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCCTAGCTTGGTAAATAATTCTTCACCGACTCATCCCAGATGGAGAAAAGTAGCTTATGGTGGTATGCAACCTGGTTATGATGACAATCATACAGATGAATCTTTCCTTGAAGGAATGGTCATGAATGCCAGTGTTGTAAAACGGGACATGCTAAAGGTGATGCTGGACTCGGTTTCCATTTCTGAATATTTATGTATTGTTGCTCTTGTTGTCTTGGTCTGGACTTGTACACTTGCATCAACTATTGATGAAAATTCTCTCCTTCTTATTGATGTAGGTCTTCTTGTTTCAGGTTTTTTAATTCTCCTTTTTACTCAAGAAATGCTTTCCCTTAGCCTTCTCTTCCATTATTTCCTTAATATCTCCTTTTTCATAACTGTGTTATATGTTTTGGCTCCCATCTATCAAACTCTTACAAGGTCCATTAGTTCGGATTCCATTTGGGCAGTAGCTGCATCACTTCTCATACTTCACCTTTTTCTGCATGACTATTCAGAATCCACCGTCAAAGCCCCGGGGGTTCTGAAGAATCCTGCATTGACCAGTTGTATCTCTGTAAATGCTTCTGTAGTCGCCTCTGTTTTTATTGCTTCTCGCCTTCCATCGAGACTACATGTGTTTGCTATCATGTTATTCTCATTGCAGGTTTTCCTTTTTGCTCCACTGGTTACTTACTGTATTAAGAAATATTCCTTCCGCTTGCACCTATGCTTTTCTATCAGTTTGATGGCCATGACCTTAAGTTTTGTGTACACACTGCATCGCCTACTTTTTGTGCTGCTGCTTAGTTTGTTGGTTTTTGTCAACGTTGTTTGCCCTTATTGGCTTATAAGGATTCAGGAGTACAAGTTTGAGATCAATGGACCTTGGGATGAGGCTAAACTTTGTTTTGATATTACAGACTAA
>Glyma12g02220.1 sequence type=predicted peptide gene model=Glyma12g02220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPSLVNNSSPTHPRWRKVAYGGMQPGYDDNHTDESFLEGMVMNASVVKRDMLKVMLDSVSISEYLCIVALVVLVWTCTLASTIDENSLLLIDVGLLVSGFLILLFTQEMLSLSLLFHYFLNISFFITVLYVLAPIYQTLTRSISSDSIWAVAASLLILHLFLHDYSESTVKAPGVLKNPALTSCISVNASVVASVFIASRLPSRLHVFAIMLFSLQVFLFAPLVTYCIKKYSFRLHLCFSISLMAMTLSFVYTLHRLLFVLLLSLLVFVNVVCPYWLIRIQEYKFEINGPWDEAKLCFDITD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
