SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16880 | AT | Annotation by Michelle Graham. TAIR10: Target of Myb protein 1 | chr5:5549658-5551274 FORWARD LENGTH=407 | SoyBase | E_val: 2.00E-156 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005795 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| PTHR13856 | Panther | VHS DOMAIN CONTAINING PROTEIN FAMILY | JGI | ISS | |
| PTHR13856:SF27 | Panther | TARGET OF MYB1 RELATED (TOM1 - RELATED) | JGI | ISS | |
| PF00790 | PFAM | VHS domain | JGI | ISS | |
| PF03127 | PFAM | GAT domain | JGI | ISS | |
| UniRef100_B9S215 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S215_RICCO | SoyBase | E_val: 3.00E-176 | ISS |
| UniRef100_I1LP72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP72_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g02000 not represented in the dataset |
Glyma12g02000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g017400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g02000.1 sequence type=CDS gene model=Glyma12g02000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGACAATTTGATGGGAAAAGTCAACGCTTTGGGGGAGCGTCTCAAAATTGGTGGGGCTGAGGTGGGTCGGAAGATGAGTGCTGGCATGAGTTCTGTGAGCTTCAAGGTCAAGGAATTTTTCCAAGATTCAAGCCATGCTGGTAAACTCGTTGGGGAAGCTACCTCTGAGGCCCTACATGAGCCTGATTGGGCTACAATTCTTCATATATGTGACTTGATCAATGCTGATCAACTTAACACTGCTGAATTGGTACGTGCAATTAAGAAAAGGGTCGTGGCCAAGAGTCCTAGAGGTCAGTATCTGGCTTTGGTTTTGCTTGAAGCGTTGGTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCAACTGAGAGAGTCCTTGATGAGATGGTCAAGCTCATTGATGACCCTCAGACTATTCTTAATAACCGGAATAAGGCTTTGATAATGATTGAGGCATGGGGAGAGTCAACCATTGAGCTTCGCTATCTGCCTGTCTATGCAGAAACTTACAAGAGTTTGAAATCAAGGGGTATTCGATTCCCTGGCCGTGACAACGAAAGCTTGGCTCCTATATTTACTCCTCCTCACTCTGCCATTACTCCAGAGGCTGATGTCAGTTTTGCAGATCTTATTCAGTATGATATTCATGGGCAAAGCTTAACCTCTGTTACTCCTCCTCGTTCTGCCACTACTCCAGAGGCTGATGTCAGTCTTGCACATCTTATGCCGCAAGATATTCATATGCAAAGTTTTAAGTCTGAACAAATAAAGGAAACATTTGATGTCGCGAGAAATAGCATTGAGCTTCTTTCTACTGTGTTGTCTTCTACAATGCAGCAGAATGTGTTGAAGGATGAGTTGACCACCACATTAGTACAACAGTGCCGTCAGTCCCAGACTAGTGTCCATAGAATCGTTGAGACTGCTTGGGATAATGAAGCAGTGCTTGTTGAGGCCTTGAATGTTAACGATGAGATTCAGAAGGTTTTCTCCAAATATGAAGAGCTGAAGAAGGAGCAGAAGGAGCCTACCGTTGTTCCATTTGAAGCTGAACCGGTTGTTACCAAAGAGGAAGCACTGATTAGAAAGCCAGGTTCAAGAATTGGAGTCCATGGAGGGAGCCACGATGACATGTTGGATGATCTTGATGAGATGATTTTTGGGAAAAAGGGTAGGGATGATGCATTTGAAGGAGGGCAACATCCAAAGAAACAACAATCATCATCAAAAGATGACCTCATCTCCTTCTAA
>Glyma12g02000.1 sequence type=predicted peptide gene model=Glyma12g02000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDNLMGKVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSSHAGKLVGEATSEALHEPDWATILHICDLINADQLNTAELVRAIKKRVVAKSPRGQYLALVLLEALVKNCDKAFLEVATERVLDEMVKLIDDPQTILNNRNKALIMIEAWGESTIELRYLPVYAETYKSLKSRGIRFPGRDNESLAPIFTPPHSAITPEADVSFADLIQYDIHGQSLTSVTPPRSATTPEADVSLAHLMPQDIHMQSFKSEQIKETFDVARNSIELLSTVLSSTMQQNVLKDELTTTLVQQCRQSQTSVHRIVETAWDNEAVLVEALNVNDEIQKVFSKYEELKKEQKEPTVVPFEAEPVVTKEEALIRKPGSRIGVHGGSHDDMLDDLDEMIFGKKGRDDAFEGGQHPKKQQSSSKDDLISF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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