Glyma12g01990 - SoyBase

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Report for Sequence Feature Glyma12g01990

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1211937
stop:	1215385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17720	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr4:9862660-9864498 REVERSE LENGTH=313	SoyBase	E_val: 1.00E-100	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF1	Panther	DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9S228	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S228_RICCO	SoyBase	E_val: 2.00E-112	ISS
UniRef100_UPI000233D1B8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D1B8 related cluster n=1 Tax=unknown RepID=UPI000233D1B8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g01990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01990 not represented in the dataset	Glyma12g01990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g01990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g017300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g01990

Limit To All Plant Sequences

>Glyma12g01990.2   sequence type=transcript   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT

>Glyma12g01990.3   sequence type=transcript   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT

>Glyma12g01990.4   sequence type=transcript   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGAATAAAGGAAAATAGAAAAAAGATTCACGTACTCTCACGCAAATAACCATTATTAATTCCGTTAGCAAAACTTCAAACCCCATCTTCTTCTCTAGAGAAAGATTGATCTCTGGCATAGGCTCAAATAACCAGATATAATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT

Coding sequences of Glyma12g01990

Limit To All Plant Sequences

>Glyma12g01990.1   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.2   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.3   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.4   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

Predicted protein sequences of Glyma12g01990

Limit To All Plant Sequences

>Glyma12g01990.1   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSGAVVCGQSLTIALAPDHALPASAASATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

>Glyma12g01990.2   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGKAKQREIENVVGTSSTWKQVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSGAVVCGQSLTIALAPDHALPASAASATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

>Glyma12g01990.3   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGKAKQREIENVVGTSSTWKQVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

>Glyma12g01990.4   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

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