|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G17720 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313 | SoyBase | E_val: 1.00E-100 | ISS |
GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
PTHR11732:SF1 | Panther | DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED | JGI | ISS | |
PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
UniRef100_B9S228 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S228_RICCO | SoyBase | E_val: 2.00E-112 | ISS |
UniRef100_UPI000233D1B8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D1B8 related cluster n=1 Tax=unknown RepID=UPI000233D1B8 | SoyBase | E_val: 0 | ISS |
Glyma12g01990 not represented in the dataset |
Glyma12g01990 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.12g017300 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01990.2 sequence type=transcript gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT >Glyma12g01990.3 sequence type=transcript gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT >Glyma12g01990.4 sequence type=transcript gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAGAATAAAGGAAAATAGAAAAAAGATTCACGTACTCTCACGCAAATAACCATTATTAATTCCGTTAGCAAAACTTCAAACCCCATCTTCTTCTCTAGAGAAAGATTGATCTCTGGCATAGGCTCAAATAACCAGATATAATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT
>Glyma12g01990.1 sequence type=CDS gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA >Glyma12g01990.2 sequence type=CDS gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA >Glyma12g01990.3 sequence type=CDS gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA >Glyma12g01990.4 sequence type=CDS gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA
>Glyma12g01990.1 sequence type=predicted peptide gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSGAVVCGQSLTIALAPDHALPASAASATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD* >Glyma12g01990.2 sequence type=predicted peptide gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGKAKQREIENVVGTSSTWKQVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSGAVVCGQSLTIALAPDHALPASAASATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD* >Glyma12g01990.3 sequence type=predicted peptide gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGKAKQREIENVVGTSSTWKQVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD* >Glyma12g01990.4 sequence type=predicted peptide gene model=Glyma12g01990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||