SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g01990): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g01990): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g01990

Feature Type:gene_model
Chromosome:Gm12
Start:1211937
stop:1215385
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17720AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313 SoyBaseE_val: 1.00E-100ISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF1Panther DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_B9S228UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S228_RICCO SoyBaseE_val: 2.00E-112ISS
UniRef100_UPI000233D1B8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D1B8 related cluster n=1 Tax=unknown RepID=UPI000233D1B8 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01990 not represented in the dataset

Glyma12g01990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g017300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g01990.2   sequence type=transcript   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT

>Glyma12g01990.3   sequence type=transcript   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT

>Glyma12g01990.4   sequence type=transcript   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGAATAAAGGAAAATAGAAAAAAGATTCACGTACTCTCACGCAAATAACCATTATTAATTCCGTTAGCAAAACTTCAAACCCCATCTTCTTCTCTAGAGAAAGATTGATCTCTGGCATAGGCTCAAATAACCAGATATAATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGATCCTCTGATTTATATTATACAAGCATATTAGTGGATTTATGAGAAGTTAGAATGGCATATGTGGAATAACTAAATAGAAATAAAATAAAACTGAAGAGCCTCAGTGTATTGATTCTTTTCTGAGACTTCATGCAGTCAAATATATACCCTATCTTGTTTTTATTACTCTAGTTATTATTAGTTGCATATATCTCCCACCGGGATAACTCATCTTGGAGAGTTTTGAGAT

>Glyma12g01990.1   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.2   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGGGGCGGTGGTGTGTGGACAGTCTCTAACCATAGCTTTGGCTCCGGATCATGCTCTGCCTGCCTCTGCTGCATCTGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.3   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGGTAAGGCAAAGCAGAGGGAGATAGAGAATGTGGTTGGCACGAGTAGCACATGGAAACAGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.4   sequence type=CDS   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTATCGGTGAAAGTCAGCAACATCTCTTCAACTGCAACCGAGCAAGATTTGAGGGAATTTCTTGCGTTTCCGGGAAAAATCGAATATATTGAAATGCAAAGTGATAAGGGAAATTCCCAAGTTGCGTATGTTACCTTCAGTAATCCAGAGGGGGCAGAAACTGCAGTTCTTCTCTCGGCAACACAGACTAGTAATGCTGAGAGTGGCGAATCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCGGCTTGCTAGCAAAGGGCTTCATTTTGGGTAAAGATGCATTGAATCGAGCAAAATCCTTTGATGAAAGGCACCAGCTAACTTCCACGGCAACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTCACTGAAAAGATCAGTGCCGGTACGGTTATAGTGAATGACAAAATGAAAGAAATGGATGAGAAATTTCAAGTGTCGGAGAAGACTAAATCTGCAATTTCAGTAGCTGAGCAGTCAGTGTCTAGTGCTGGATCTGCCATAATGAAGAATCGTTATGTGTTGACTGGGGCTACATGGGTAACGGGTGCTTACAGCAGGGTTGCTAAGGCAGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCCCAGGACAATCAAGGAAAAACTGAAGAAGGTGCTCATGTCCACACATCCATTTCTGAACCTAATCAACCATCCAAAACTGAACCTCAACAGGCAACCACAGCTAATCAGCCTTCCAAACCTGAACAACAGGCCACCAAGGATGGTCAACCTTCCAATTCTGCAACAACTAAGGATTGA

>Glyma12g01990.1   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSGAVVCGQSLTIALAPDHALPASAASATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

>Glyma12g01990.2   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGKAKQREIENVVGTSSTWKQVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSGAVVCGQSLTIALAPDHALPASAASATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

>Glyma12g01990.3   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGKAKQREIENVVGTSSTWKQVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*

>Glyma12g01990.4   sequence type=predicted peptide   gene model=Glyma12g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSVKVSNISSTATEQDLREFLAFPGKIEYIEMQSDKGNSQVAYVTFSNPEGAETAVLLSATQTSNAESGESGLRKAEDVVTGLLAKGFILGKDALNRAKSFDERHQLTSTATAKVVSLDQKVGFTEKISAGTVIVNDKMKEMDEKFQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYSRVAKAAEEVGQKTKEKVLAQDNQGKTEEGAHVHTSISEPNQPSKTEPQQATTANQPSKPEQQATKDGQPSNSATTKD*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo