SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27600 | AT | Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr4:13782753-13785005 REVERSE LENGTH=471 | SoyBase | E_val: 0 | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG2854 | KOG | Possible pfkB family carbohydrate kinase | JGI | ISS | |
| PTHR10584 | Panther | SUGAR KINASE RELATED | JGI | ISS | |
| PTHR10584:SF26 | Panther | PFKB FAMILY SUGAR KINASE-RELATED | JGI | ISS | |
| PF00294 | PFAM | pfkB family carbohydrate kinase | JGI | ISS | |
| UniRef100_G7JSU0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbohydrate kinase-like protein n=1 Tax=Medicago truncatula RepID=G7JSU0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LP63 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP63_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g01920 not represented in the dataset |
Glyma12g01920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g016500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01920.1 sequence type=CDS gene model=Glyma12g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATGTCTCTGTCTCTTCTTCGTATCTTCTCTTCGCCCCACCTTTCCACCTCTCTCTTCTTTCCAACTCCAACTCTTTCTTCCCTCTGCCCTTCTTTCCTTTCCAAATTACCAAATGCCCCCTCTCCCCTCATTGTTTTATGCCACAGGGACGCCTCAGCTTCGAAGCAAGGTCACCTCGGAGTCCCTGAAGGTGCAGAACGTGACAGTGGGAGCGAAGAAGATGATGATGCTGTTGAACAACCCATGAGGGCCAGTTACGACGACGACGAAGACGAAGAAGAAGGAGCTCTTAGCTCCTTAGTTTTTCCTGAAAGATGGGATGTATTGGGTCTCGGTCAAGCCATGGTAGACTTCTCTGGCATGGTTGATGATAATTTCCTGAAGAATTTGGGATTAGAGAAGGGAACACGGAAAGTAGTAAATCATGAGGAAAGAGGTAGAGTTTTGCAGGCCATGGATGGGTGCAGCTATAAAGCTGCAGCTGGTGGATCTCTTTCTAATACCTTAGTTGCCCTCGCAAGGCTTGGAAGTCGCTCCGAAAAAGTTCCTGCTATAAATGTGGCAATGACCGGTAGTGTAGGGAGTGATCTATTAGGGGGCTTCTACAGGGAAAAATTACGCCGAGCAAATGTGCAATTTCTTTCTGCACCAATCAAGGATGGGACTACTGGAACAGTTATAGTTCTCACAACTCCAGATGCCCAGCGCACAATGCTTGCATATCAGGGCACATCTTCAACTGTTAACTATGATGCATCCTTAGCTAATGCAGTTTCCAAGACAAACATACTTGTCGTCGAAGGGTATCTATTTGAACTTCCTGATACCATTAAAACAATAACCAAAGCATGTGAGAAAGCACGGTCGAACGGTGCCTTGGTTGCAATAACAGCTTCAGATGTCTCCTGCATTGAGAGACACTTTGATGATTTCTGGGAAATTATTGGGAATTGTGTGGATTTAGTCTTTGCAAATGGAAATGAGGCCAGAGCTCTTTGTAATTTTGAAGCAAAGGAAAGTGCTGCTTCAGCTGCAAGGTATCTGAGCCACTTTGTTCCTCTAGTATCCGTTACAGATGGTCCTACAGGCTCTTACATTGGTGTAAAAGGAGAAGCTGTATATATCCCTCCTTCTCCATGTGTTCCAGTTGATACTTGTGGTGCTGGGGATGCATATGCATCTGGCATACTCTATGGTCTTTTAAGAGGCATATCAGATTTGAGAAGCATAGGCTCATTAGCAGCTAAGGTTGCTGCCACTGTTGTTGGACAACAGGGAACTCGGCTTAGGATTTCAGATGCAGTCAAATTGGCTGAATCTTTTGAATTTCAACTTGATTCCTCCTCTGTTGGCACTGATCATAATATTTCCAGCGTCTAA
>Glyma12g01920.1 sequence type=predicted peptide gene model=Glyma12g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSMSLSLLRIFSSPHLSTSLFFPTPTLSSLCPSFLSKLPNAPSPLIVLCHRDASASKQGHLGVPEGAERDSGSEEDDDAVEQPMRASYDDDEDEEEGALSSLVFPERWDVLGLGQAMVDFSGMVDDNFLKNLGLEKGTRKVVNHEERGRVLQAMDGCSYKAAAGGSLSNTLVALARLGSRSEKVPAINVAMTGSVGSDLLGGFYREKLRRANVQFLSAPIKDGTTGTVIVLTTPDAQRTMLAYQGTSSTVNYDASLANAVSKTNILVVEGYLFELPDTIKTITKACEKARSNGALVAITASDVSCIERHFDDFWEIIGNCVDLVFANGNEARALCNFEAKESAASAARYLSHFVPLVSVTDGPTGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYGLLRGISDLRSIGSLAAKVAATVVGQQGTRLRISDAVKLAESFEFQLDSSSVGTDHNISSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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