Glyma12g01880 - SoyBase

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Report for Sequence Feature Glyma12g01880

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1139465
stop:	1143538
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48150	AT	Annotation by Michelle Graham. TAIR10: anaphase-promoting complex subunit 8 \| chr3:17779800-17782565 REVERSE LENGTH=579	SoyBase	E_val: 0	ISS
GO:0007049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle	SoyBase	N/A	ISS
GO:0007276	GO-bp	Annotation by Michelle Graham. GO Biological Process: gamete generation	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0030071	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of mitotic metaphase/anaphase transition	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0032875	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1155	KOG	Anaphase-promoting complex (APC), Cdc23 subunit	JGI		ISS
PTHR12558	Panther	ANAPHASE PROMOTING COMPLEX SUBUNIT	JGI		ISS
PTHR12558:SF10	Panther	CELL DIVISION CYCLE 23	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
PF04049	PFAM	Anaphase promoting complex subunit 8 / Cdc23	JGI		ISS
UniRef100_B9R8Z3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle, putative n=1 Tax=Ricinus communis RepID=B9R8Z3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LP56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP56_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g01880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01880 not represented in the dataset	Glyma12g01880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g01880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g016100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g01880

Limit To All Plant Sequences

>Glyma12g01880.2   sequence type=transcript   gene model=Glyma12g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCTTTTATTTTTAATTTTTCTGGAACGGATAGAAGTGGGAATAGAGAAGAGACAGTAGAAGGGAATGAAATAGGAGAGCGGGAAAGACATGGGAGACTGGAGAGAGCAATTGGAAGCGAAGGCAATGAGTTCCAAAGACAGTTGCAGAAGCGAGCTTCGCATTGCCATTCGCCAACTCGGCGATCGATGCCTCTACTCTGCTTCTAAATGGGCAGCAGAACAGTTGGTGGGTATTGAGGCAGACAATGCTAAGTTCACTCCTTCGAATACGAGGTTCCATCGTGGGAGTTCAAGCATTCGCCGCAAGTACAGGACACACGAGACCGCGGTTACCCCGGTCGTGGGTGTTTCCTATGATGCCACACCTGTGTTGGAGGAGGATGAACTTGTAGATGGTGATTTTTACCTTCTGGCAAAGTCCTATTTCGATTGCCGTGAGTATAAGAGAGCTGCTCATGTTCTTCGCGATCAAATGGGAAGGAAATCGGTGTTCTTGCGCTGTTATGCTCTCTATCTGGCTGGAGAAAAGCGAAAAGACGAAGAGACGATAGAACTTGAGGGGCCTTTGGGTAAGAGTGATGCTATCAATCATGAATTGGTTTCTTTGGAGAGAGAGTTGTCAACACTTCACAAGAATGGCCAAGCCGATCCTTTTTGTTTGTATTTATATGGTCTTGTGCTCAAACAGAAAGGCAATGAGAGCCTTGCACGTGTTGTTCTTGTAGAATCTGTGAATAGCTACCCTTGGAACTGGAATGCCTGGACGGAGCTGCAATCCTTGTGCAAAAAAGTTGATACCTTGAATAGTCTTAATCTCAATAGTCATTGGATGAAGGACTTTTTCCTTGCCAGTGTTTACCAAGAATTAAGGATGTATAATGACTCTCTGTCCAAGTATGAATATCTACTAGGAACCTTTGGTTATAGTAATTACATACAGGCACAAATTGCCAAAGCCCAGTACAGTTTGAGGGAATTTGATCAAGTTGAAGCAATATTTGAAGAACTGTTGAAGAATGATCCTTATAGAGTGGAAGACATGGACATGTATTCCAATGTGCTATATGCTAAGGAATGTTCTGCTAGTTTGAGTTATCTTGCCCATAGAGTATTCATGACTGATAAATACAAACCTGAGTCTTGTTGTATTATTGGGAATTATTACAGTTTAAAGGGGCAGCATGAGAAGTCAGTTGTGTATTTCAGGAGAGCCCTTAAATTGGACAAAAATTATTTAACTGCTTGGACACTCATGGGTCATGAGTTTGTTGAGATGAAAAACACTCCTGCTGCTGTGGATGCCTATCGTCGAGCTGTAGATATAGATTCGTGTGATTACCGTGCTTGGTATGGACTTGGACAGGCCTATGAGATGATGGGCATGCCTTTTTATGCACTTCATTACTTCAAAAAATCTGTATTATTGCAGCAAAATGATTCTCGGCTGTGGATTGCAATGGCTCAGTGTTATGAAACTGATCAACTTCGCATGCTTGATGATGCAATAAAGTGTTACAAAAGGGCAGTAAATTGTAATGACAGAGAAGCAATTGCTCTGCATCAGCTAGCAAAGCTGCACTCGGAGCTAGGGCACACTGAAGAGGCTGCATTTTACTACAAAAAGGATTTAGAGAGGATGGAATCTGAAGATAGAGAAGAACCTACAATGATTGAGGCTTTGCTCTATCTTGCAAAATATTACAGAGAACAGCAAAAATTTGAAGAAGCGGATGTTTACTGTACACGTCTTGTGGACTATACTGGCCCGGAGAGAGAAACAGCAAAAAGTTTACTTAGAGGAATGCAATTAACACAATCAAGTTTCCCTTCCATGGATGTTGAGCACTTTCCTCCCTAATTTCTCTTGATGGAGATTGGTGTTCTATGCCGCATTTATCAGTTTTGATTTGTGGTTGTGGATCACAGTTTAAACACAAAGGGAAACCTAATAAACATGTGTGAACTGTGAAATAGAAGGGGTGAGAGAGGTGGCAAAGGGAAATTACCTGAGAGGGTTATGGAAAATGAACCAGCAGTTGTTAGTAACCATTAGGATGCAACTTCATTCATGGTGTACTATTTGGTACTAACATTGATCCCACATTGTACATGATTTGAGATTCAACTTTCCTTCGAATTATTTGTGTAGGATTTGTATATTTGTGTGTTTGTGTGTGTGTGTG

Coding sequences of Glyma12g01880

Limit To All Plant Sequences

>Glyma12g01880.1   sequence type=CDS   gene model=Glyma12g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACTGGAGAGAGCAATTGGAAGCGAAGGCAATGAGTTCCAAAGACAGTTGCAGAAGCGAGCTTCGCATTGCCATTCGCCAACTCGGCGATCGATGCCTCTACTCTGCTTCTAAATGGGCAGCAGAACAGTTGGTGGGTATTGAGGCAGACAATGCTAAGTTCACTCCTTCGAATACGAGGTTCCATCGTGGGAGTTCAAGCATTCGCCGCAAGTACAGGACACACGAGACCGCGGTTACCCCGGTCGTGGGTGTTTCCTATGATGCCACACCTGTGTTGGAGGAGGATGAACTTGTAGATGGTGATTTTTACCTTCTGGCAAAGTCCTATTTCGATTGCCGTGAGTATAAGAGAGCTGCTCATGTTCTTCGCGATCAAATGGGAAGGAAATCGGTGTTCTTGCGCTGTTATGCTCTCTATCTGGCTGGAGAAAAGCGAAAAGACGAAGAGACGATAGAACTTGAGGGGCCTTTGGGTAAGAGTGATGCTATCAATCATGAATTGGTTTCTTTGGAGAGAGAGTTGTCAACACTTCACAAGAATGGCCAAGCCGATCCTTTTTGTTTGTATTTATATGGTCTTGTGCTCAAACAGAAAGGCAATGAGAGCCTTGCACGTGTTGTTCTTGTAGAATCTGTGAATAGCTACCCTTGGAACTGGAATGCCTGGACGGAGCTGCAATCCTTGTGCAAAAAAGTTGATACCTTGAATAGTCTTAATCTCAATAGTCATTGGATGAAGGACTTTTTCCTTGCCAGTGTTTACCAAGAATTAAGGATGTATAATGACTCTCTGTCCAAGTATGAATATCTACTAGGAACCTTTGGTTATAGTAATTACATACAGGCACAAATTGCCAAAGCCCAGTACAGTTTGAGGGAATTTGATCAAGTTGAAGCAATATTTGAAGAACTGTTGAAGAATGATCCTTATAGAGTGGAAGACATGGACATGTATTCCAATGTGCTATATGCTAAGGAATGTTCTGCTAGTTTGAGTTATCTTGCCCATAGAGTATTCATGACTGATAAATACAAACCTGAGTCTTGTTGTATTATTGGGAATTATTACAGTTTAAAGGGGCAGCATGAGAAGTCAGTTGTGTATTTCAGGAGAGCCCTTAAATTGGACAAAAATTATTTAACTGCTTGGACACTCATGGGTCATGAGTTTGTTGAGATGAAAAACACTCCTGCTGCTGTGGATGCCTATCGTCGAGCTGTAGATATAGATTCGTGTGATTACCGTGCTTGGTATGGACTTGGACAGGCCTATGAGATGATGGGCATGCCTTTTTATGCACTTCATTACTTCAAAAAATCTGTATTATTGCAGCAAAATGATTCTCGGCTGTGGATTGCAATGGCTCAGTGTTATGAAACTGATCAACTTCGCATGCTTGATGATGCAATAAAGTGTTACAAAAGGGCAGTAAATTGTAATGACAGAGAAGCAATTGCTCTGCATCAGCTAGCAAAGCTGCACTCGGAGCTAGGGCACACTGAAGAGGCTGCATTTTACTACAAAAAGGATTTAGAGAGGATGGAATCTGAAGATAGAGAAGAACCTACAATGATTGAGGCTTTGCTCTATCTTGCAAAATATTACAGAGAACAGCAAAAATTTGAAGAAGCGGATGTTTACTGTACACGTCTTGTGGACTATACTGGCCCGGAGAGAGAAACAGCAAAAAGTTTACTTAGAGGAATGCAATTAACACAATCAAGTTTCCCTTCCATGGATGTTGAGCACTTTCCTCCCTAA

>Glyma12g01880.2   sequence type=CDS   gene model=Glyma12g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGACTGGAGAGAGCAATTGGAAGCGAAGGCAATGAGTTCCAAAGACAGTTGCAGAAGCGAGCTTCGCATTGCCATTCGCCAACTCGGCGATCGATGCCTCTACTCTGCTTCTAAATGGGCAGCAGAACAGTTGGTGGGTATTGAGGCAGACAATGCTAAGTTCACTCCTTCGAATACGAGGTTCCATCGTGGGAGTTCAAGCATTCGCCGCAAGTACAGGACACACGAGACCGCGGTTACCCCGGTCGTGGGTGTTTCCTATGATGCCACACCTGTGTTGGAGGAGGATGAACTTGTAGATGGTGATTTTTACCTTCTGGCAAAGTCCTATTTCGATTGCCGTGAGTATAAGAGAGCTGCTCATGTTCTTCGCGATCAAATGGGAAGGAAATCGGTGTTCTTGCGCTGTTATGCTCTCTATCTGGCTGGAGAAAAGCGAAAAGACGAAGAGACGATAGAACTTGAGGGGCCTTTGGGTAAGAGTGATGCTATCAATCATGAATTGGTTTCTTTGGAGAGAGAGTTGTCAACACTTCACAAGAATGGCCAAGCCGATCCTTTTTGTTTGTATTTATATGGTCTTGTGCTCAAACAGAAAGGCAATGAGAGCCTTGCACGTGTTGTTCTTGTAGAATCTGTGAATAGCTACCCTTGGAACTGGAATGCCTGGACGGAGCTGCAATCCTTGTGCAAAAAAGTTGATACCTTGAATAGTCTTAATCTCAATAGTCATTGGATGAAGGACTTTTTCCTTGCCAGTGTTTACCAAGAATTAAGGATGTATAATGACTCTCTGTCCAAGTATGAATATCTACTAGGAACCTTTGGTTATAGTAATTACATACAGGCACAAATTGCCAAAGCCCAGTACAGTTTGAGGGAATTTGATCAAGTTGAAGCAATATTTGAAGAACTGTTGAAGAATGATCCTTATAGAGTGGAAGACATGGACATGTATTCCAATGTGCTATATGCTAAGGAATGTTCTGCTAGTTTGAGTTATCTTGCCCATAGAGTATTCATGACTGATAAATACAAACCTGAGTCTTGTTGTATTATTGGGAATTATTACAGTTTAAAGGGGCAGCATGAGAAGTCAGTTGTGTATTTCAGGAGAGCCCTTAAATTGGACAAAAATTATTTAACTGCTTGGACACTCATGGGTCATGAGTTTGTTGAGATGAAAAACACTCCTGCTGCTGTGGATGCCTATCGTCGAGCTGTAGATATAGATTCGTGTGATTACCGTGCTTGGTATGGACTTGGACAGGCCTATGAGATGATGGGCATGCCTTTTTATGCACTTCATTACTTCAAAAAATCTGTATTATTGCAGCAAAATGATTCTCGGCTGTGGATTGCAATGGCTCAGTGTTATGAAACTGATCAACTTCGCATGCTTGATGATGCAATAAAGTGTTACAAAAGGGCAGTAAATTGTAATGACAGAGAAGCAATTGCTCTGCATCAGCTAGCAAAGCTGCACTCGGAGCTAGGGCACACTGAAGAGGCTGCATTTTACTACAAAAAGGATTTAGAGAGGATGGAATCTGAAGATAGAGAAGAACCTACAATGATTGAGGCTTTGCTCTATCTTGCAAAATATTACAGAGAACAGCAAAAATTTGAAGAAGCGGATGTTTACTGTACACGTCTTGTGGACTATACTGGCCCGGAGAGAGAAACAGCAAAAAGTTTACTTAGAGGAATGCAATTAACACAATCAAGTTTCCCTTCCATGGATGTTGAGCACTTTCCTCCCTAA

Predicted protein sequences of Glyma12g01880

Limit To All Plant Sequences

>Glyma12g01880.1   sequence type=predicted peptide   gene model=Glyma12g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDWREQLEAKAMSSKDSCRSELRIAIRQLGDRCLYSASKWAAEQLVGIEADNAKFTPSNTRFHRGSSSIRRKYRTHETAVTPVVGVSYDATPVLEEDELVDGDFYLLAKSYFDCREYKRAAHVLRDQMGRKSVFLRCYALYLAGEKRKDEETIELEGPLGKSDAINHELVSLERELSTLHKNGQADPFCLYLYGLVLKQKGNESLARVVLVESVNSYPWNWNAWTELQSLCKKVDTLNSLNLNSHWMKDFFLASVYQELRMYNDSLSKYEYLLGTFGYSNYIQAQIAKAQYSLREFDQVEAIFEELLKNDPYRVEDMDMYSNVLYAKECSASLSYLAHRVFMTDKYKPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLTAWTLMGHEFVEMKNTPAAVDAYRRAVDIDSCDYRAWYGLGQAYEMMGMPFYALHYFKKSVLLQQNDSRLWIAMAQCYETDQLRMLDDAIKCYKRAVNCNDREAIALHQLAKLHSELGHTEEAAFYYKKDLERMESEDREEPTMIEALLYLAKYYREQQKFEEADVYCTRLVDYTGPERETAKSLLRGMQLTQSSFPSMDVEHFPP*

>Glyma12g01880.2   sequence type=predicted peptide   gene model=Glyma12g01880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDWREQLEAKAMSSKDSCRSELRIAIRQLGDRCLYSASKWAAEQLVGIEADNAKFTPSNTRFHRGSSSIRRKYRTHETAVTPVVGVSYDATPVLEEDELVDGDFYLLAKSYFDCREYKRAAHVLRDQMGRKSVFLRCYALYLAGEKRKDEETIELEGPLGKSDAINHELVSLERELSTLHKNGQADPFCLYLYGLVLKQKGNESLARVVLVESVNSYPWNWNAWTELQSLCKKVDTLNSLNLNSHWMKDFFLASVYQELRMYNDSLSKYEYLLGTFGYSNYIQAQIAKAQYSLREFDQVEAIFEELLKNDPYRVEDMDMYSNVLYAKECSASLSYLAHRVFMTDKYKPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLTAWTLMGHEFVEMKNTPAAVDAYRRAVDIDSCDYRAWYGLGQAYEMMGMPFYALHYFKKSVLLQQNDSRLWIAMAQCYETDQLRMLDDAIKCYKRAVNCNDREAIALHQLAKLHSELGHTEEAAFYYKKDLERMESEDREEPTMIEALLYLAKYYREQQKFEEADVYCTRLVDYTGPERETAKSLLRGMQLTQSSFPSMDVEHFPP*

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