SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23255 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 52 Blast hits to 52 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:8311795-8312947 FORWARD LENGTH=224 | SoyBase | E_val: 5.00E-51 | ISS |
| UniRef100_UPI000233D1B6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D1B6 related cluster n=1 Tax=unknown RepID=UPI000233D1B6 | SoyBase | E_val: 4.00E-109 | ISS |
|
Glyma12g01860 not represented in the dataset |
Glyma12g01860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g016000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01860.2 sequence type=CDS gene model=Glyma12g01860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCGTTACAGTGGGAAGACTTGTCTTCTTTTCCAATTTGTATTCAATGTAGCACTCCACTCCAATAACAACGTCATCTTCATTTGCTACCGCCTTAGGTTGGATTCCAAACCCCCTTTTCTTTCTCAGGGTATTGATCCTTCTTCTCATGTATTCCACCGTATACAAATGAAGTACGTGAATGATGATCAAGACATTCGCAAGTACTTTGCTGCCTTCCACCTGTATGATGCATTGCCTGCAGCTGTTCTTATTGATGATTTCGGAGATTTCTTTGACGACAAGGTTCTCTTGTCAGATACTCATACTCACCAGAGAGACTCCCCAAGGTTTCACTTCATCTATAAGAAATGGATACAAACCACTTTTACTATTAAAGAGGGGGACGTACCTGGATCATTTATAGTCAAAGATAGGAGTCATTCACCAACTGATCACACAACTACTATTAAAGCTGCAAAGTACTCCATAGCTCTTCAATATCTGGTTTTTCATGGAATTGTCGAAGATCAATTACAATAG
>Glyma12g01860.2 sequence type=predicted peptide gene model=Glyma12g01860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRYSGKTCLLFQFVFNVALHSNNNVIFICYRLRLDSKPPFLSQGIDPSSHVFHRIQMKYVNDDQDIRKYFAAFHLYDALPAAVLIDDFGDFFDDKVLLSDTHTHQRDSPRFHFIYKKWIQTTFTIKEGDVPGSFIVKDRSHSPTDHTTTIKAAKYSIALQYLVFHGIVEDQLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
