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Report for Sequence Feature Glyma12g01820

Feature Type:gene_model
Chromosome:Gm12
Start:1117455
stop:1118670
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g01820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02910AT Annotation by Michelle Graham. TAIR10: AIG2-like (avirulence induced gene) family protein | chr3:649986-650549 FORWARD LENGTH=187 SoyBaseE_val: 2.00E-73ISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4450 KOG Uncharacterized conserved protein JGI ISS
PTHR12510Panther TROPONIN C-AKIN-1 PROTEIN JGI ISS
PF06094PFAM AIG2-like family JGI ISS
UniRef100_I1LP52UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP52_SOYBN SoyBaseE_val: 2.00E-140ISS
UniRef100_Q9FIQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: AIG2-like (Avirulence induced gene) family protein n=1 Tax=Arabidopsis thaliana RepID=Q9FIQ3_ARATH SoyBaseE_val: 1.00E-42ISS

Expression Patterns of Glyma12g01820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01820 not represented in the dataset
Glyma12g01820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g01820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g015700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g01820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g01820
>Glyma12g01820.1   sequence type=CDS   gene model=Glyma12g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCCGAGAGAGAGGTTAACGGTAACGGCGTCGGAGAGGGAAGAACAACGCTAATATTCACCTACGGAACCCTGAAGCGAGGCTTCTCCAACCACCCCCTTCTCCAAGACCTCATTCGCTCCGGCGACGCCTCCTTCGTCGGAACCTACCGCACCGCCGCCAAATATCCTCTGGTCTGTGGGCCCTACAAGGTCCCCTTCCTCCTCAACATTCCCGGGTCGGGTCATGGGGTCCATGGGGAGCTTTACTCGGTCTCCACGCGCGGCCTCGAGCGCATGGACGAGCTCGAGGGAACCTCACGCGCCCACTACGAGCGTCTCCCGATCAAGGTGGTTCCTGCGGCCGAGGAAGAGGACGACGACGGGTTTGATGGGGAGGAGGAGGCGGCGGCGGGGCTAACGTGCGCCGAGGCGTATTATGCGCATGGGAACTACGCGATGGAGCTGTGGAAGAAAAACGGGAAGCGTGGGTTGAGGTGTTATTCGCAGAAAGAGACAATTGGTTATGTGAAGCGCAAGGATAGGCCTCAGCATTTGACCTTCCTGGATCACATTCGCTTCTTCCTTTCCTCTAATTAG
Predicted protein sequences of Glyma12g01820
>Glyma12g01820.1   sequence type=predicted peptide   gene model=Glyma12g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAEREVNGNGVGEGRTTLIFTYGTLKRGFSNHPLLQDLIRSGDASFVGTYRTAAKYPLVCGPYKVPFLLNIPGSGHGVHGELYSVSTRGLERMDELEGTSRAHYERLPIKVVPAAEEEDDDGFDGEEEAAAGLTCAEAYYAHGNYAMELWKKNGKRGLRCYSQKETIGYVKRKDRPQHLTFLDHIRFFLSSN*






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