SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16650 | AT | Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr5:5463446-5465075 REVERSE LENGTH=128 | SoyBase | E_val: 3.00E-57 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| PTHR24077 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24077:SF88 | Panther | JGI | ISS | ||
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| UniRef100_I1LP50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP50_SOYBN | SoyBase | E_val: 4.00E-86 | ISS |
| UniRef100_Q9FMD2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT5g16650/MTG13_10 n=1 Tax=Arabidopsis thaliana RepID=Q9FMD2_ARATH | SoyBase | E_val: 1.00E-54 | ISS |
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Glyma12g01810 not represented in the dataset |
Glyma12g01810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g015600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01810.2 sequence type=transcript gene model=Glyma12g01810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTAATTGAAAATTTATTTTCAATTATTCTATTTTATTTTTTATATCAGATTTCCATTTCCTTGAGAATTTTACCATGGTGAACATGTGCGACGCATAACATTAGAAAGAGTCATACCAAAAGGAAAAAATACAGAAAAGGGAAAAAAAATCCCTAAACGCCATCCGAATTTCCCAATTGTGGCATAGGAATGTCCTCCTGTTTTGTCTTTCACCACACAATTTCCCAATTCTAATTTTGTTTTCTCTCACACACACACTCCTTCCAATCTCCAACTAAATACTATTCTTCAATTTGAAGCGTGTCTGTAGTTGGTTGAAGCACTGTGGTATTGTTCTGGTTTTGGTCTCCGAGGTTTGTATCGGAATCCGATGTATTATGCAAAAGAAGCTGCGCATGTCGACCCCATTTTCGTAGCACATGGCTGCCGCTGATAACACCAACCCAAAGGATTATTACAAAGTGCTGGAGGTTGAATATGATGCAACCGATGAAAATATCAAATTAAATTACCGAAGACTCGCGTTGAAATGGCATCCTGACAAGCACGGAGGTGATAGTGCTGTTACTGCAAAATTTCAAGAGATTATTGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTTTGGACTATGATTTAACTGGGATATGTGAGATTGAAAAATATAGCTTGCAGGAATATCTTGCCAGATTTAAAAGCATGATTCTTACCTGCAATGGACTTGGTATCAATCAGACAGACAGATGGTATTTATTTTGATTTTTTTTTCCTGTCTTTCTGTGCACTGTTGTTCAATGGCAGAGGTGGGATTCACCTGCTATAAAGTCTTGAATGTAACCATCTATAATGTCTTGAATGTAACCATAACAAATCCTGTCGATCTATGAGGAATTTCAAAATGAACAGGACTAAAATCTGTTTCTAGTGAAAACTTGCATTACCGTATAGAGAACTATATAATTGGTTCTTTCCACGCAACCACTTGAACTTTATTTTCTCTAAAGCCCAACATTTACTTCAAGGGCTCTAAAGTCAAAACTATATTTTGGATGTC
>Glyma12g01810.1 sequence type=CDS gene model=Glyma12g01810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCGCTGATAACACCAACCCAAAGGATTATTACAAAGTGCTGGAGGTTGAATATGATGCAACCGATGAAAATATCAAATTAAATTACCGAAGACTCGCGTTGAAATGGCATCCTGACAAGCACGGAGGTGATAGTGCTGTTACTGCAAAATTTCAAGAGATTATTGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTTTGGACTATGATTTAACTGGGATATGTGAGATTGAAAAATATAGCTTGCAGGAATATCTTGCCAGATTTAAAAGCATGATTCTTACCTGCAATGGACTTGGTATCAATCAGACAGACAGATGGTCACAACAATTGATTGAAAATTTTGAGTCCCTAGATAAATAA >Glyma12g01810.2 sequence type=CDS gene model=Glyma12g01810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCGCTGATAACACCAACCCAAAGGATTATTACAAAGTGCTGGAGGTTGAATATGATGCAACCGATGAAAATATCAAATTAAATTACCGAAGACTCGCGTTGAAATGGCATCCTGACAAGCACGGAGGTGATAGTGCTGTTACTGCAAAATTTCAAGAGATTATTGAAGCTTACAATGTATTAAGTGATCCTGCCAAGCGTTTGGACTATGATTTAACTGGGATATGTGAGATTGAAAAATATAGCTTGCAGGAATATCTTGCCAGATTTAAAAGCATGATTCTTACCTGCAATGGACTTGGTATCAATCAGACAGACAGATGGTATTTATTTTGA
>Glyma12g01810.1 sequence type=predicted peptide gene model=Glyma12g01810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAADNTNPKDYYKVLEVEYDATDENIKLNYRRLALKWHPDKHGGDSAVTAKFQEIIEAYNVLSDPAKRLDYDLTGICEIEKYSLQEYLARFKSMILTCNGLGINQTDRWSQQLIENFESLDK* >Glyma12g01810.2 sequence type=predicted peptide gene model=Glyma12g01810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAADNTNPKDYYKVLEVEYDATDENIKLNYRRLALKWHPDKHGGDSAVTAKFQEIIEAYNVLSDPAKRLDYDLTGICEIEKYSLQEYLARFKSMILTCNGLGINQTDRWYLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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