SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27630 | AT | Annotation by Michelle Graham. TAIR10: GPCR-type G protein 2 | chr4:13791980-13797033 REVERSE LENGTH=467 | SoyBase | E_val: 0 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0043231 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0010427 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: abscisic acid binding | SoyBase | N/A | ISS |
| GO:0051020 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase binding | SoyBase | N/A | ISS |
| KOG2417 | KOG | Predicted G-protein coupled receptor | JGI | ISS | |
| PTHR15948 | Panther | G-PROTEIN COUPLED RECEPTOR 89-RELATED | JGI | ISS | |
| PF12430 | PFAM | Abscisic acid G-protein coupled receptor | JGI | ISS | |
| PF12537 | PFAM | Protein of unknown function (DUF3735) | JGI | ISS | |
| UniRef100_G7K0Z9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GPCR-type G protein n=1 Tax=Medicago truncatula RepID=G7K0Z9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LP41 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LP41_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma12g01740 not represented in the dataset |
Glyma12g01740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g014800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01740.3 sequence type=transcript gene model=Glyma12g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAGCAAAAAAATAAAAAATAATGGAAGTAGAATTGAATAAGGAGTGGAGATGAAAATGCAAATGAGCTTAGCATCAACCTTTAAAGGGGTTGTTATTGATGAATTGAAAGTTGTTGTTGGATTAGTGGATCTGGTCTGAGGGAGCGAGTGATGGTTGTTGATTGGATTGAGAAGAGAAAGTAATTGGAGTGAGAAATGGGTTGGGGAAGGGGAGTGTTGGAAGGTGTGGTGGTGTTGGGATGTCTGTGTTTATTGGGTTGGGCGGGTCTCTGGTTTTTGAACCGTCGACTCTACAAAGAGTACGAAGAGAAACGTGTCCTCGTCCAAATCATCTTCAGCGTCGTCTTTGCCTTCTCCTGCAATCTTCTCCAGCTTGTCATCTTCGAAATCATTCCCATCCTCTCCAAAGAGGCAAGAGTGGTGAACTGGAAGGTGGACTTGTTCTGTTTGATCTTGTTGCTCGTGTTCCTGCTCCCTTATTACCATTGCTACTTGATGCTAAAAAACAACGGCCTCAGGACCGAGAGGGCTGCGCTTGGTGCTATTCTGTTTTTGTTTGCTTTTCTCTATGCCTTTTGGCGCATGGGCATTCACTTTCCAATGCCATCTCCTGATAAAGGTTTCTTCACCATGGCTCAACTGGTGAGTAGAATTGGGGTCATCGGAGTTACTGTCATGGCTGTGCTATCTGGTTTTGGTGCTGTAAACCTCCCATACAGTTACTTGTCACTTTTCATCAGAGAGATTGAGGAAACAGAAATCAAGGCCTTGGAAAGACAGCTAATGCAATCGATTGAGACTTGTGTATCAAAGAAAAAGAAAATTATTCTTTGCCAAATGGAGATGGATAACAAGCAAGGATCTGAAGAGAAGTTAAATGCTAGATCTTTAATTAAACGAATTGTTGGTACGGTTGTTCGATCCGTGCAAGAGGATCAAAAAGAGCAAGATATTAAAGGCTTGGAAGCAGAAGTTCTGGCCTTAGAAGAGCTTTCGAAGCAATTGTTCTTAGAGATCTATGAACTTCGTCAAGCAAAGGAAGCTGCTGCTTATTCTCGAACTTGGAGAGGACACATGCAGAATCTACTTGGCTATGCTTGTTCTGTATATTGTGTGTATAAAATGATCAAGTCATTGCAAAGTGTTGTTTTCAAACAGGATGGTTCTGTTGATCCTGTGACAAGGACAATAAGTATATTTCTTCAGTTCTTTGATATAGGAATAAATGCAGCCTTATTATCACAGTATATTTCCTTGCTATTCATCGGAATGTTGGTTGTGATATCAGTGCGTGGATTCTTAACCAACCTAATGAAGTTCTTTTTTGCTGTTTCAAGAGTTGGAAGTGGATCTTCAAGCAATGTAGTTCTGTTTTTGTCTGAGATAATGGGAATGTATTTTGTATCTTCTATTCTTTTAATCAGGAAAAGCTTAGCAACTGAATACAGGATTATTATTACAGAGGTATTGGGTGGTGATATCCAGTTTGACTTTTATCACCGATGGTTTGATGCAATTTTTGTGGCTAGTGCATTCCTTTCACTGCTTTTACTTTCTGCACATTATACATCTCGCCAAATTGACAAACATCCAATTGATTAACAGGAAACATACTCCGTAGATGCATGTATAGTTTTTAATGCCTCGGGAGGTTTGATATCAGGCCAGTGAACATATATGTTTAAATCTTCCAGATGGATGCATTTGAATTCATTTGATAGCTGATAGAGGTCGTTCAATTTTTTTATGTGCCAGTGAATAGCTTGTTAGAACATCTGATGCTACTGGAGCTAATCACCAGTGAGAGGGTTGATATTGTTATAGTTAATATCAACAGATGCGCATTGTGCAAAATCTTTTAGTATACCCATTTGTTTTTGTTGATTTTCTGAGCAGAAATATTGTTGGACAATATGTTGAATGTAGATTTGCTTTTGCATTGTTAAGTATAGAATGAATTGGATGAGAATAGTTTTTGCACATGGGATTGGTACCATAAGAACAGATGAATAGTTATTGGCGATTGGTAATTTTGGATTATCAGTGGTTGAAATTCCCACTCAAATACTTTGGCCGTTTGTTTGTCTTGAAAATTTTCTTTTCTGGTGTCAGTATATCTCTTATCTAACTTGGTGATTGGCCATTGTATTATCTTTACTTATAGTAACGAATCTGACTTGATTTTAGTGACCAACAAGGC
>Glyma12g01740.2 sequence type=CDS gene model=Glyma12g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGGGAAGGGGAGTGTTGGAAGGTGTGGTGGTGTTGGGATGTCTGTGTTTATTGGGTTGGGCGGGTCTCTGGTTTTTGAACCGTCGACTCTACAAAGAGTACGAAGAGAAACGTGTCCTCGTCCAAATCATCTTCAGCGTCGTCTTTGCCTTCTCCTGCAATCTTCTCCAGCTTGTCATCTTCGAAATCATTCCCATCCTCTCCAAAGAGGCAAGAGTGGTGAACTGGAAGGTGGACTTGTTCTGTTTGATCTTGTTGCTCGTGTTCCTGCTCCCTTATTACCATTGCTACTTGATGCTAAAAAACAACGGCCTCAGGACCGAGAGGGCTGCGCTTGGTGCTATTCTGTTTTTGTTTGCTTTTCTCTATGCCTTTTGGCGCATGGGCATTCACTTTCCAATGCCATCTCCTGATAAAGGTTTCTTCACCATGGCTCAACTGGTGAGTAGAATTGGGGTCATCGGAGTTACTGTCATGGCTGTGCTATCTGGTTTTGGTGCTGTAAACCTCCCATACAGTTACTTGTCACTTTTCATCAGAGAGATTGAGGAAACAGAAATCAAGGCCTTGGAAAGACAGCTAATGCAATCGATTGAGACTTGTGTATCAAAGAAAAAGAAAATTATTCTTTGCCAAATGGAGATGGATAACAAGCAAGGATCTGAAGAGAAGTTAAATGCTAGATCTTTAATTAAACGAATTGTTGGTACGGTTGTTCGATCCGTGCAAGAGGATCAAAAAGAGCAAGATATTAAAGGCTTGGAAGCAGAAGTTCTGGCCTTAGAAGAGCTTTCGAAGCAATTGTTCTTAGAGATCTATGAACTTCGTCAAGCAAAGGAAGCTGCTGCTTATTCTCGAACTTGGAGAGGACACATGCAGAATCTACTTGGCTATGCTTGTTCTGTATATTGTGTGTATAAAATGATCAAGTCATTGCAAAGTGTTGTTTTCAAACAGGATGGTTCTGTTGATCCTGTGACAAGGACAATAAGTATATTTCTTCAGTTCTTTGATATAGGAATAAATGCAGCCTTATTATCACAGTATATTTCCTTGCTATTCATCGGAATGTTGGTTGTGATATCAGTGCGTGGATTCTTAACCAACCTAATGAAGTTCTTTTTTGCTGTTTCAAGAGTTGGAAGTGGATCTTCAAGCAATGTAGTTCTGTTTTTGTCTGAGATAATGGGAATGTATTTTGTATCTTCTATTCTTTTAATCAGGAAAAGCTTAGCAACTGAATACAGGATTATTATTACAGAGGTATTGGGTGGTGATATCCAGTTTGACTTTTATCACCGATGGTTTGATGCAATTTTTGTGGCTAGTGCATTCCTTTCACTGCTTTTACTTTCTGCACATTATACATCTCGCCAAATTGACAAACATCCAATTGATTAA >Glyma12g01740.3 sequence type=CDS gene model=Glyma12g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGGGAAGGGGAGTGTTGGAAGGTGTGGTGGTGTTGGGATGTCTGTGTTTATTGGGTTGGGCGGGTCTCTGGTTTTTGAACCGTCGACTCTACAAAGAGTACGAAGAGAAACGTGTCCTCGTCCAAATCATCTTCAGCGTCGTCTTTGCCTTCTCCTGCAATCTTCTCCAGCTTGTCATCTTCGAAATCATTCCCATCCTCTCCAAAGAGGCAAGAGTGGTGAACTGGAAGGTGGACTTGTTCTGTTTGATCTTGTTGCTCGTGTTCCTGCTCCCTTATTACCATTGCTACTTGATGCTAAAAAACAACGGCCTCAGGACCGAGAGGGCTGCGCTTGGTGCTATTCTGTTTTTGTTTGCTTTTCTCTATGCCTTTTGGCGCATGGGCATTCACTTTCCAATGCCATCTCCTGATAAAGGTTTCTTCACCATGGCTCAACTGGTGAGTAGAATTGGGGTCATCGGAGTTACTGTCATGGCTGTGCTATCTGGTTTTGGTGCTGTAAACCTCCCATACAGTTACTTGTCACTTTTCATCAGAGAGATTGAGGAAACAGAAATCAAGGCCTTGGAAAGACAGCTAATGCAATCGATTGAGACTTGTGTATCAAAGAAAAAGAAAATTATTCTTTGCCAAATGGAGATGGATAACAAGCAAGGATCTGAAGAGAAGTTAAATGCTAGATCTTTAATTAAACGAATTGTTGGTACGGTTGTTCGATCCGTGCAAGAGGATCAAAAAGAGCAAGATATTAAAGGCTTGGAAGCAGAAGTTCTGGCCTTAGAAGAGCTTTCGAAGCAATTGTTCTTAGAGATCTATGAACTTCGTCAAGCAAAGGAAGCTGCTGCTTATTCTCGAACTTGGAGAGGACACATGCAGAATCTACTTGGCTATGCTTGTTCTGTATATTGTGTGTATAAAATGATCAAGTCATTGCAAAGTGTTGTTTTCAAACAGGATGGTTCTGTTGATCCTGTGACAAGGACAATAAGTATATTTCTTCAGTTCTTTGATATAGGAATAAATGCAGCCTTATTATCACAGTATATTTCCTTGCTATTCATCGGAATGTTGGTTGTGATATCAGTGCGTGGATTCTTAACCAACCTAATGAAGTTCTTTTTTGCTGTTTCAAGAGTTGGAAGTGGATCTTCAAGCAATGTAGTTCTGTTTTTGTCTGAGATAATGGGAATGTATTTTGTATCTTCTATTCTTTTAATCAGGAAAAGCTTAGCAACTGAATACAGGATTATTATTACAGAGGTATTGGGTGGTGATATCCAGTTTGACTTTTATCACCGATGGTTTGATGCAATTTTTGTGGCTAGTGCATTCCTTTCACTGCTTTTACTTTCTGCACATTATACATCTCGCCAAATTGACAAACATCCAATTGATTAA
>Glyma12g01740.2 sequence type=predicted peptide gene model=Glyma12g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWGRGVLEGVVVLGCLCLLGWAGLWFLNRRLYKEYEEKRVLVQIIFSVVFAFSCNLLQLVIFEIIPILSKEARVVNWKVDLFCLILLLVFLLPYYHCYLMLKNNGLRTERAALGAILFLFAFLYAFWRMGIHFPMPSPDKGFFTMAQLVSRIGVIGVTVMAVLSGFGAVNLPYSYLSLFIREIEETEIKALERQLMQSIETCVSKKKKIILCQMEMDNKQGSEEKLNARSLIKRIVGTVVRSVQEDQKEQDIKGLEAEVLALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYACSVYCVYKMIKSLQSVVFKQDGSVDPVTRTISIFLQFFDIGINAALLSQYISLLFIGMLVVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLATEYRIIITEVLGGDIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQIDKHPID* >Glyma12g01740.3 sequence type=predicted peptide gene model=Glyma12g01740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWGRGVLEGVVVLGCLCLLGWAGLWFLNRRLYKEYEEKRVLVQIIFSVVFAFSCNLLQLVIFEIIPILSKEARVVNWKVDLFCLILLLVFLLPYYHCYLMLKNNGLRTERAALGAILFLFAFLYAFWRMGIHFPMPSPDKGFFTMAQLVSRIGVIGVTVMAVLSGFGAVNLPYSYLSLFIREIEETEIKALERQLMQSIETCVSKKKKIILCQMEMDNKQGSEEKLNARSLIKRIVGTVVRSVQEDQKEQDIKGLEAEVLALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYACSVYCVYKMIKSLQSVVFKQDGSVDPVTRTISIFLQFFDIGINAALLSQYISLLFIGMLVVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLATEYRIIITEVLGGDIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQIDKHPID*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
