Glyma12g01730 - SoyBase

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Report for Sequence Feature Glyma12g01730

Feature Type:	gene_model
Chromosome:	Gm12
Start:	1061212
stop:	1065353
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13960	AT	Annotation by Michelle Graham. TAIR10: growth-regulating factor 5 \| chr3:4608526-4610160 FORWARD LENGTH=397	SoyBase	E_val: 1.00E-48	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016818	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	SoyBase	N/A	ISS
PF08879	PFAM	WRC	JGI		ISS
PF08880	PFAM	QLQ	JGI		ISS
UniRef100_I1LP39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP39_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6AWY4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Growth-regulating factor 5 n=2 Tax=Oryza sativa RepID=GRF5_ORYSJ	SoyBase	E_val: 4.00E-79	ISS

Expression Patterns of Glyma12g01730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g01730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g014700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g01730

Limit To All Plant Sequences

>Glyma12g01730.2   sequence type=transcript   gene model=Glyma12g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTGACTTGAATGCAAGTTTACTTTAAGTATTAATTAGTTGGAGCATCACAAGCAAAGCAAACCCAAATCCAAATGGTTCCTTCCGACAAAGCTCGATCCGAGTGTGATCTCATGTTTCGGCTCTAACTATGTTTGATTTCGATACCCAACAAGAGTGTCGTGTTATTAATAGGACTAAGAGTAGCGCAAGTAGACAACAGTGGAAAACATGAACATCAGTGGCGGAGGAGGAACTGTGATGGGTTTCAGTAGTAATGGGAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCCGATCTCGTCCTCCCCATTCAGAAGAGCTTCGACTCTACTCTCTCTCACGCTTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCGTCTTCAACTGTCACATCACTCACTGTGACTGGTGGTGGTGACAGTAATGGAACTGTAAACTTCCAAAACCTTCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCGCACGAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTGTCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTACTGATTCCCTGTTGCATAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCGGGAGAACACGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTCTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGATATATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGATAATTAGAGCAGTCCTTCAAGATTTTCAGTGCAATGTTATGGAAGGATCAAATAAGTCTAGTAGTAGATGTGTGGTCCAAAGGAAATCCCATGTTCAAGTATTTTCATTCAAGCTGAGCTGTTGTACAACTTTATGGAACCTCAGCCATTTGTTATAAGCAAGACCATAATCTTCTTATTTGATGGTGGGTATTTGTTGAACCTTGGAACATTCTTGGTTTTGTATCTAATGAAAACATAAATACTTCGTACTGAATGAGTTTATGCTGAATAAAGTCACTAGTTTTGTTCATGAATTAATGCATCCCTTAGAAGTTGGAACTCCAGTTGTCTGTGCATTTTGCTTTGCAGAGGCCTCTCTCTCTTCGTG

Coding sequences of Glyma12g01730

Limit To All Plant Sequences

>Glyma12g01730.1   sequence type=CDS   gene model=Glyma12g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATCAGTGGCGGAGGAGGAACTGTGATGGGTTTCAGTAGTAATGGGAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCCGATCTCGTCCTCCCCATTCAGAAGAGCTTCGACTCTACTCTCTCTCACGCTTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCGTCTTCAACTGTCACATCACTCACTGTGACTGGTGGTGGTGACAGTAATGGAACTGTAAACTTCCAAAACCTTCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCGCACGAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTGTCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTACTGATTCCCTGTTGCATAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCGGGAGAACACGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTCTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGATATATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAGAATGAGATTCAATTTAGGTAA

>Glyma12g01730.2   sequence type=CDS   gene model=Glyma12g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATCAGTGGCGGAGGAGGAACTGTGATGGGTTTCAGTAGTAATGGGAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCCGATCTCGTCCTCCCCATTCAGAAGAGCTTCGACTCTACTCTCTCTCACGCTTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCGTCTTCAACTGTCACATCACTCACTGTGACTGGTGGTGGTGACAGTAATGGAACTGTAAACTTCCAAAACCTTCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCGCACGAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTGTCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTACTGATTCCCTGTTGCATAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCGGGAGAACACGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTCTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGATATATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGATAATTAG

Predicted protein sequences of Glyma12g01730

Limit To All Plant Sequences

>Glyma12g01730.1   sequence type=predicted peptide   gene model=Glyma12g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNISGGGGTVMGFSSNGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSTLSHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTHSSSTVTSLTVTGGGDSNGTVNFQNLPTNAFGNLQGTDSGTDRTNYHLDSIPYAIPSKEYRCLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPSMSTRVASFSTSKSSTDSLLHSDYPQHSFLSGEYASGEHVKEEGQPLRPFSNEWPKSRESWSGLEDDISNQTAFSTTQLSISIPMSSDFSATSSQSPHGENEIQFR*

>Glyma12g01730.2   sequence type=predicted peptide   gene model=Glyma12g01730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNISGGGGTVMGFSSNGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSTLSHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTHSSSTVTSLTVTGGGDSNGTVNFQNLPTNAFGNLQGTDSGTDRTNYHLDSIPYAIPSKEYRCLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPSMSTRVASFSTSKSSTDSLLHSDYPQHSFLSGEYASGEHVKEEGQPLRPFSNEWPKSRESWSGLEDDISNQTAFSTTQLSISIPMSSDFSATSSQSPHDN*

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