SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13960 | AT | Annotation by Michelle Graham. TAIR10: growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397 | SoyBase | E_val: 1.00E-48 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| PF08879 | PFAM | WRC | JGI | ISS | |
| PF08880 | PFAM | QLQ | JGI | ISS | |
| UniRef100_I1LP39 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP39_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6AWY4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Growth-regulating factor 5 n=2 Tax=Oryza sativa RepID=GRF5_ORYSJ | SoyBase | E_val: 4.00E-79 | ISS |
|
Glyma12g01730 not represented in the dataset |
Glyma12g01730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g014700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01730.2 sequence type=transcript gene model=Glyma12g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTTGACTTGAATGCAAGTTTACTTTAAGTATTAATTAGTTGGAGCATCACAAGCAAAGCAAACCCAAATCCAAATGGTTCCTTCCGACAAAGCTCGATCCGAGTGTGATCTCATGTTTCGGCTCTAACTATGTTTGATTTCGATACCCAACAAGAGTGTCGTGTTATTAATAGGACTAAGAGTAGCGCAAGTAGACAACAGTGGAAAACATGAACATCAGTGGCGGAGGAGGAACTGTGATGGGTTTCAGTAGTAATGGGAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCCGATCTCGTCCTCCCCATTCAGAAGAGCTTCGACTCTACTCTCTCTCACGCTTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCGTCTTCAACTGTCACATCACTCACTGTGACTGGTGGTGGTGACAGTAATGGAACTGTAAACTTCCAAAACCTTCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCGCACGAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTGTCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTACTGATTCCCTGTTGCATAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCGGGAGAACACGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTCTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGATATATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGATAATTAGAGCAGTCCTTCAAGATTTTCAGTGCAATGTTATGGAAGGATCAAATAAGTCTAGTAGTAGATGTGTGGTCCAAAGGAAATCCCATGTTCAAGTATTTTCATTCAAGCTGAGCTGTTGTACAACTTTATGGAACCTCAGCCATTTGTTATAAGCAAGACCATAATCTTCTTATTTGATGGTGGGTATTTGTTGAACCTTGGAACATTCTTGGTTTTGTATCTAATGAAAACATAAATACTTCGTACTGAATGAGTTTATGCTGAATAAAGTCACTAGTTTTGTTCATGAATTAATGCATCCCTTAGAAGTTGGAACTCCAGTTGTCTGTGCATTTTGCTTTGCAGAGGCCTCTCTCTCTTCGTG
>Glyma12g01730.1 sequence type=CDS gene model=Glyma12g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATCAGTGGCGGAGGAGGAACTGTGATGGGTTTCAGTAGTAATGGGAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCCGATCTCGTCCTCCCCATTCAGAAGAGCTTCGACTCTACTCTCTCTCACGCTTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCGTCTTCAACTGTCACATCACTCACTGTGACTGGTGGTGGTGACAGTAATGGAACTGTAAACTTCCAAAACCTTCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCGCACGAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTGTCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTACTGATTCCCTGTTGCATAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCGGGAGAACACGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTCTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGATATATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAGAATGAGATTCAATTTAGGTAA >Glyma12g01730.2 sequence type=CDS gene model=Glyma12g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATCAGTGGCGGAGGAGGAACTGTGATGGGTTTCAGTAGTAATGGGAGGTCCCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATTTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCTCCCGATCTCGTCCTCCCCATTCAGAAGAGCTTCGACTCTACTCTCTCTCACGCTTTCTTTCACCATCCCACACTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCGTCTTCAACTGTCACATCACTCACTGTGACTGGTGGTGGTGACAGTAATGGAACTGTAAACTTCCAAAACCTTCCCACAAATGCCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTGACCGCACGAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTGTCTTCAAGGACTTAAATCTGAGGGTGGTGAACACTGCTTCTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTCGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTACTGATTCCCTGTTGCATAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCGGGAGAACACGTGAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTCTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGATATATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCGATTTCTCTGCAACGAGCTCTCAGTCCCCACATGATAATTAG
>Glyma12g01730.1 sequence type=predicted peptide gene model=Glyma12g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNISGGGGTVMGFSSNGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSTLSHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTHSSSTVTSLTVTGGGDSNGTVNFQNLPTNAFGNLQGTDSGTDRTNYHLDSIPYAIPSKEYRCLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPSMSTRVASFSTSKSSTDSLLHSDYPQHSFLSGEYASGEHVKEEGQPLRPFSNEWPKSRESWSGLEDDISNQTAFSTTQLSISIPMSSDFSATSSQSPHGENEIQFR* >Glyma12g01730.2 sequence type=predicted peptide gene model=Glyma12g01730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNISGGGGTVMGFSSNGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSTLSHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTHSSSTVTSLTVTGGGDSNGTVNFQNLPTNAFGNLQGTDSGTDRTNYHLDSIPYAIPSKEYRCLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPSMSTRVASFSTSKSSTDSLLHSDYPQHSFLSGEYASGEHVKEEGQPLRPFSNEWPKSRESWSGLEDDISNQTAFSTTQLSISIPMSSDFSATSSQSPHDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
