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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16690 | AT | Annotation by Michelle Graham. TAIR10: origin recognition complex subunit 3 | chr5:5474410-5479878 FORWARD LENGTH=734 | SoyBase | E_val: 0 | ISS |
| GO:0000724 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0000808 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: origin recognition complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005664 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear origin of replication recognition complex | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2538 | KOG | Origin recognition complex, subunit 3 | JGI | ISS | |
| PTHR12748 | Panther | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 | JGI | ISS | |
| PF07034 | PFAM | Origin recognition complex (ORC) subunit 3 N-terminus | JGI | ISS | |
| UniRef100_G7KH11 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Origin recognition complex subunit n=1 Tax=Medicago truncatula RepID=G7KH11_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D1B1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D1B1 related cluster n=1 Tax=unknown RepID=UPI000233D1B1 | SoyBase | E_val: 0 | ISS |
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Glyma12g01720 not represented in the dataset |
Glyma12g01720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g014600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01720.4 sequence type=transcript gene model=Glyma12g01720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGATGTATCATGATTATCACTTCAATCCAAAACGTCATCTTCGAATGATATTGGAGACTTCAAAAGCTGGAAAGGAACGGCCTTTGGAGATAACATGGAAGCACTTAACCGATACGGATCAGGGCCTTCTCTCTCTTCGCTCTCGCGTGTGTTGATAGCAGATTCCAAATCTTCATCAGATGGCACCTTCTCGGAGTGTCGCTGATTCAACGCCTCCGTCAACAACATCCGAAGTCGTAGAGAACGATTTTCAGCCATTCTTTGTTCTTCATAAAGCTTCATCCCGGAGAAAAGATAGAAAACCAACAGCTCAGGGAAAATTGTGGAAGAGAAATGAGTTATCTTCATCATTTCCACAAGGTGCAAAGAAACTTGGAGGAAGAATGACTGAAGAATGTGATCACCATTTGTTTCAGCAACTGCAGATTGAAGCTTTTGACATTGTTTGGGCAAAGATTGAATCTACCATTAAGGATGTTTTAAGAGATCTCAATGCCATTGTATTTAATGATATACAAAAATGGGTTCTGGAGTGCTTCAACGCTACTAAGTTGCTTGGAGAACCTACTATTGCTGAAGCAACTCGGTCTTTTCCCACTCTAAATAATACTACTCCTGGGCAGATGTTCACTGCTTTCGTTTCTACCAGAAACATAGAGTTCGTTGATGATATATTGACATTTGAAGAGCTTGGTCACTTCCTGAAATCCCATGGATGCCATGTGGCTAAGCTTTCATCACTGGAGTTTTCATCAAAAAATGGGATTGCTGGTTGCTTGAAAGCCTTATTGCAAGAGTTTCTTGGGTGTGCTATTGATTCAGCTGATATATCAATCTTAGCATCATGGTATAGAGAACAAGTCAACTACAATAAACCACTGTTGCTGATCGTTAATGATTTGGAGAGATGTTGTGGATCAGTCTTAACTGATTTTATCTTGATGTTGAGTGAATGGGTTGTCAAGGTACCAATCATCTTCATATTTGGAGTTGCAACGACAGTGGATGCCTCCAGAAACATTCTGCCATCACATGCTCTTGAGCGTTTGTGTCCCTCTAGGTTTATGCTTGGAACACCAGTCGAGAGAATGGATGCAATTGTTGAGGCTGTTCTTCTGAAACATTGCACCACGTTTAGTATTGGTTATAAAGTGGCAGTCTTCCTAAGAAACTACTTCATCAACCAGGATGGGACAGTGACATCCTTTATTAGAGCTTTGAAGGTAGCTTGCTTATTACATTTCTCAATGGAACCTCTAAGTGTCATACATGGGCAAACACTCGCTGAAGATCAGAAAGAGGGAAAATCTGCACTATCACCCGAGACTCTCTTGAAATACATAGATGAACTTCCATTGTGTGCAAGGAATCAAACAGTTGATCATCCGACTCAAAAAAGCATGTCTGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAGCTATGGAGCACTGCAGTTCTGTGCCTATATGAAGCTGGAAAGTATAGCAGAGTGCGACTATTGGATTTGTTTTGTGAAGCTCTCAGTCAAGATTTATACCTTTCAAGGGTTTCTGATTGTCATGTGGGGGATGAAAAAGATCGTGATTTGTCCTCAACAAATGATCCCAGACAACAATATTCCATCATGAAAAGCGGTGGTATTATTGGCAAAATAGTATGCAAAGTGAGGGATATCCCTACAGGGATGCTATATCAGTTGATTGAGAGTTGGGAAAAACTTACTGCTGATGTTTCAGAGATTCATGAGAAATTGAAAATCTTGCAATCTTCAGTAAGATGTGAAGATGGAAAGAGTTCACGCAAGAGTTCCAAGGACAATTCCAAGAGATATCCAGTAAACATTGACAAGGATGCGAGAATGTTAAATTTACAAGCTATCGCATTTTTAGATTATCTACTTAGAAATTTTTTGAAGCCCGTTGAAGGCATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAATTGCTTCATAATATTTGTTGTTAGCCTCAACAAAATGAACTTTCATTTGCGGGTAACCCACTGGGTCCAG
>Glyma12g01720.3 sequence type=CDS gene model=Glyma12g01720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCTTCTCGGAGTGTCGCTGATTCAACGCCTCCGTCAACAACATCCGAAGTCGTAGAGAACGATTTTCAGCCATTCTTTGTTCTTCATAAAGCTTCATCCCGGAGAAAAGATAGAAAACCAACAGCTCAGGGAAAATTGTGGAAGAGAAATGAGTTATCTTCATCATTTCCACAAGGTGCAAAGAAACTTGGAGGAAGAATGACTGAAGAATGTGATCACCATTTGTTTCAGCAACTGCAGATTGAAGCTTTTGACATTGTTTGGGCAAAGATTGAATCTACCATTAAGGATGTTTTAAGAGATCTCAATGCCATTGTATTTAATGATATACAAAAATGGGTTCTGGAGTGCTTCAACGCTACTAAGTTGCTTGGAGAACCTACTATTGCTGAAGCAACTCGGTCTTTTCCCACTCTAAATAATACTACTCCTGGGCAGATGTTCACTGCTTTCGTTTCTACCAGAAACATAGAGTTCGTTGATGATATATTGACATTTGAAGAGCTTGGTCACTTCCTGAAATCCCATGGATGCCATGTGGCTAAGCTTTCATCACTGGAGTTTTCATCAAAAAATGGGATTGCTGGTTGCTTGAAAGCCTTATTGCAAGAGTTTCTTGGGTGTGCTATTGATTCAGCTGATATATCAATCTTAGCATCATGGTATAGAGAACAAGTCAACTACAATAAACCACTGTTGCTGATCGTTAATGATTTGGAGAGATGTTGTGGATCAGTCTTAACTGATTTTATCTTGATGTTGAGTGAATGGGTTGTCAAGGTACCAATCATCTTCATATTTGGAGTTGCAACGACAGTGGATGCCTCCAGAAACATTCTGCCATCACATGCTCTTGAGCGTTTGTGTCCCTCTAGGTTTATGCTTGGAACACCAGTCGAGAGAATGGATGCAATTGTTGAGGCTGTTCTTCTGAAACATTGCACCACGTTTAGTATTGGTTATAAAGTGGCAGTCTTCCTAAGAAACTACTTCATCAACCAGGATGGGACAGTGACATCCTTTATTAGAGCTTTGAAGGTAGCTTGCTTATTACATTTCTCAATGGAACCTCTAAGTGTCATACATGGGCAAACACTCGCTGAAGATCAGAAAGAGGGAAAATCTGCACTATCACCCGAGACTCTCTTGAAATACATAGATGAACTTCCATTGTGTGCAAGGAATCAAACAGTTGATCATCCGACTCAAAAAAGCATGTCTGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAGCTATGGAGCACTGCAGTTCTGTGCCTATATGAAGCTGGAAAGTATAGCAGAGTGCGACTATTGGATTTGTTTTGTGAAGCTCTCAGTCAAGATTTATACCTTTCAAGGGTTTCTGATTGTCATGTGGGGGATGAAAAAGATCGTGATTTGTCCTCAACAAATGATCCCAGACAACAATATTCCATCATGAAAAGCGGTGGTATTATTGGCAAAATAGTATGCAAAGTGAGGGATATCCCTACAGGGATGCTATATCAGTTGATTGAGAGTTGGGAAAAACTTACTGCTGATGTTTCAGAGATTCATGAGAAATTGAAAATCTTGCAATCTTCAGTAAGATGTGAAGATGGAAAGAGTTCACGCAAGAGTTCCAAGGACAATTCCAAGAGATATCCAGTAAACATTGACAAGGATGCGAGAATGTTAAATTTACAAGCTATCGCATTTTTAGATTATCTACTTAGAAATTTTTTGAAGCCCGTTGAAGGCATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAATTGGTTTTGATTGGAGATCCAAGAAGAAGAATTCAAGTTGATCTATTGGAGTTCCATAAGATTTTAAGGTGCAGCTGTTGTAGCAAGAGTGGCAATGCCCTATTGCCATCCAGGCATGACTCCTCAATTATGTATTCTCTGGCTCAAGAGCATGGAGATCTTATCAATCTTCATGACTGGTTCCAGTCTTTTAGAACAATTGTTATTCAACATAAAAATAAACGGAAACAAAATTCAAAGCAATCCCCCTCATCAAAGAAGAGAAAAGATATAAATGGATCTGCCGACCAAAACGAAGCATCGATTCAAGCACGCTTTTGTAGGGCAGTTACTGAGCTGCAGATTACTGGACTAGTTAGAATGCCCAGCAAGAGACGCCCGGATTTTGCTCAAAGAGTAGCATTTGGACTTTGA >Glyma12g01720.4 sequence type=CDS gene model=Glyma12g01720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCTTCTCGGAGTGTCGCTGATTCAACGCCTCCGTCAACAACATCCGAAGTCGTAGAGAACGATTTTCAGCCATTCTTTGTTCTTCATAAAGCTTCATCCCGGAGAAAAGATAGAAAACCAACAGCTCAGGGAAAATTGTGGAAGAGAAATGAGTTATCTTCATCATTTCCACAAGGTGCAAAGAAACTTGGAGGAAGAATGACTGAAGAATGTGATCACCATTTGTTTCAGCAACTGCAGATTGAAGCTTTTGACATTGTTTGGGCAAAGATTGAATCTACCATTAAGGATGTTTTAAGAGATCTCAATGCCATTGTATTTAATGATATACAAAAATGGGTTCTGGAGTGCTTCAACGCTACTAAGTTGCTTGGAGAACCTACTATTGCTGAAGCAACTCGGTCTTTTCCCACTCTAAATAATACTACTCCTGGGCAGATGTTCACTGCTTTCGTTTCTACCAGAAACATAGAGTTCGTTGATGATATATTGACATTTGAAGAGCTTGGTCACTTCCTGAAATCCCATGGATGCCATGTGGCTAAGCTTTCATCACTGGAGTTTTCATCAAAAAATGGGATTGCTGGTTGCTTGAAAGCCTTATTGCAAGAGTTTCTTGGGTGTGCTATTGATTCAGCTGATATATCAATCTTAGCATCATGGTATAGAGAACAAGTCAACTACAATAAACCACTGTTGCTGATCGTTAATGATTTGGAGAGATGTTGTGGATCAGTCTTAACTGATTTTATCTTGATGTTGAGTGAATGGGTTGTCAAGGTACCAATCATCTTCATATTTGGAGTTGCAACGACAGTGGATGCCTCCAGAAACATTCTGCCATCACATGCTCTTGAGCGTTTGTGTCCCTCTAGGTTTATGCTTGGAACACCAGTCGAGAGAATGGATGCAATTGTTGAGGCTGTTCTTCTGAAACATTGCACCACGTTTAGTATTGGTTATAAAGTGGCAGTCTTCCTAAGAAACTACTTCATCAACCAGGATGGGACAGTGACATCCTTTATTAGAGCTTTGAAGGTAGCTTGCTTATTACATTTCTCAATGGAACCTCTAAGTGTCATACATGGGCAAACACTCGCTGAAGATCAGAAAGAGGGAAAATCTGCACTATCACCCGAGACTCTCTTGAAATACATAGATGAACTTCCATTGTGTGCAAGGAATCAAACAGTTGATCATCCGACTCAAAAAAGCATGTCTGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAGCTATGGAGCACTGCAGTTCTGTGCCTATATGAAGCTGGAAAGTATAGCAGAGTGCGACTATTGGATTTGTTTTGTGAAGCTCTCAGTCAAGATTTATACCTTTCAAGGGTTTCTGATTGTCATGTGGGGGATGAAAAAGATCGTGATTTGTCCTCAACAAATGATCCCAGACAACAATATTCCATCATGAAAAGCGGTGGTATTATTGGCAAAATAGTATGCAAAGTGAGGGATATCCCTACAGGGATGCTATATCAGTTGATTGAGAGTTGGGAAAAACTTACTGCTGATGTTTCAGAGATTCATGAGAAATTGAAAATCTTGCAATCTTCAGTAAGATGTGAAGATGGAAAGAGTTCACGCAAGAGTTCCAAGGACAATTCCAAGAGATATCCAGTAAACATTGACAAGGATGCGAGAATGTTAAATTTACAAGCTATCGCATTTTTAGATTATCTACTTAGAAATTTTTTGAAGCCCGTTGAAGGCATGCCTTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAATTGCTTCATAATATTTGTTGTTAG
>Glyma12g01720.3 sequence type=predicted peptide gene model=Glyma12g01720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPSRSVADSTPPSTTSEVVENDFQPFFVLHKASSRRKDRKPTAQGKLWKRNELSSSFPQGAKKLGGRMTEECDHHLFQQLQIEAFDIVWAKIESTIKDVLRDLNAIVFNDIQKWVLECFNATKLLGEPTIAEATRSFPTLNNTTPGQMFTAFVSTRNIEFVDDILTFEELGHFLKSHGCHVAKLSSLEFSSKNGIAGCLKALLQEFLGCAIDSADISILASWYREQVNYNKPLLLIVNDLERCCGSVLTDFILMLSEWVVKVPIIFIFGVATTVDASRNILPSHALERLCPSRFMLGTPVERMDAIVEAVLLKHCTTFSIGYKVAVFLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSVIHGQTLAEDQKEGKSALSPETLLKYIDELPLCARNQTVDHPTQKSMSEGLSELVTVQKLWSTAVLCLYEAGKYSRVRLLDLFCEALSQDLYLSRVSDCHVGDEKDRDLSSTNDPRQQYSIMKSGGIIGKIVCKVRDIPTGMLYQLIESWEKLTADVSEIHEKLKILQSSVRCEDGKSSRKSSKDNSKRYPVNIDKDARMLNLQAIAFLDYLLRNFLKPVEGMPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHKILRCSCCSKSGNALLPSRHDSSIMYSLAQEHGDLINLHDWFQSFRTIVIQHKNKRKQNSKQSPSSKKRKDINGSADQNEASIQARFCRAVTELQITGLVRMPSKRRPDFAQRVAFGL* >Glyma12g01720.4 sequence type=predicted peptide gene model=Glyma12g01720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPSRSVADSTPPSTTSEVVENDFQPFFVLHKASSRRKDRKPTAQGKLWKRNELSSSFPQGAKKLGGRMTEECDHHLFQQLQIEAFDIVWAKIESTIKDVLRDLNAIVFNDIQKWVLECFNATKLLGEPTIAEATRSFPTLNNTTPGQMFTAFVSTRNIEFVDDILTFEELGHFLKSHGCHVAKLSSLEFSSKNGIAGCLKALLQEFLGCAIDSADISILASWYREQVNYNKPLLLIVNDLERCCGSVLTDFILMLSEWVVKVPIIFIFGVATTVDASRNILPSHALERLCPSRFMLGTPVERMDAIVEAVLLKHCTTFSIGYKVAVFLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSVIHGQTLAEDQKEGKSALSPETLLKYIDELPLCARNQTVDHPTQKSMSEGLSELVTVQKLWSTAVLCLYEAGKYSRVRLLDLFCEALSQDLYLSRVSDCHVGDEKDRDLSSTNDPRQQYSIMKSGGIIGKIVCKVRDIPTGMLYQLIESWEKLTADVSEIHEKLKILQSSVRCEDGKSSRKSSKDNSKRYPVNIDKDARMLNLQAIAFLDYLLRNFLKPVEGMPFHEIFCFKNVEKLQLLHNICC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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