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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma12g01630

Feature Type:gene_model
Chromosome:Gm12
Start:975872
stop:984447
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55310AT Annotation by Michelle Graham. TAIR10: DNA topoisomerase 1 beta | chr5:22430389-22434590 REVERSE LENGTH=917 SoyBaseE_val: 0ISS
GO:0001676GO-bp Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0002213GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to insect SoyBaseN/AISS
GO:0006265GO-bp Annotation by Michelle Graham. GO Biological Process: DNA topological change SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005694GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromosome SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003917GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type I activity SoyBaseN/AISS
GO:0003918GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity SoyBaseN/AISS
GO:0031490GO-mf Annotation by Michelle Graham. GO Molecular Function: chromatin DNA binding SoyBaseN/AISS
KOG0981 KOG DNA topoisomerase I JGI ISS
PTHR10290Panther DNA TOPOISOMERASE TYPE I JGI ISS
PF01028PFAM Eukaryotic DNA topoisomerase I, catalytic core JGI ISS
PF02919PFAM Eukaryotic DNA topoisomerase I, DNA binding fragment JGI ISS
UniRef100_I1LP26UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LP26_SOYBN SoyBaseE_val: 0ISS
UniRef100_O24307UniRef Annotation by Michelle Graham. Most informative UniRef hit: Topoisomerase I n=1 Tax=Pisum sativum RepID=O24307_PEA SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01630 not represented in the dataset

Glyma12g01630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g35730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g013600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g01630.1   sequence type=CDS   gene model=Glyma12g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTGAGACTTCTGATAAACCAAATTTACCCCATGATTTTGAGGATGATGATGATGGGCCAGTAATTTACAAAAGGTACTCATCATCTAAGAAAAATCAATCGCATTCAGAAGTAAGGAAGTCAAGTTCTCACAGTCATGATGGACAGTCTTATAGGCAGATTTCTAATGCACCTTCTTCAAGTGGCCAAACTTCCTGCCTTCAGAAAGGTAATACTGTCCCATCTGCCAAGCCATCACCTGTGAAGCCTTCTGTAGGCATCTCCAAAGCTTCTAAATCTCTTGTCAACACCTCCTCCACGAAGTTGCCTGTAGCAAATTCAAAATCACCTTCTTTGGGAGATAGACAGAAAATGTCCGTAGATATTAAGGGGGAACCAAAAACTATTGAACACCATGCTAAAAATTTCGTTGAAGATTCAGAAGATGATGAGGATAATAAACCGTTGAGTTTTAGGTTGAAGAATTCTAACCATGATAACAAAGTGACCTCTGTTATTGCCAAAAAATCTTCTGAAGACTCTGATGATGATGTCCCTTTGGCAAAAAAGTTATACCGTAATTCCAATTTGGGAACAACTAGCAGTAACCATGATGACTCCAATCAGAAGAAGCCTATTTCTAAAATTCAGAAAGAGCAGAAAAATGGTTCTGGTATGAGTAATAAACTAGATAGGCCATCTCCATTGCCAGCTAAGAGACCACTAGATAATAGTAATTCCTTGCACCCCTCTGTTAAGAAGTCAAAGGTCTTAGATCCAGTTGCATCTATCAAATCTAAGGCAGTCTCTGTGAAACATGAACTGAAGGTAGAGGATGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAATCAGCAATGTCAGGTGATAAATCATCTTCCATGAAGAAGGTGCTGACAAAGGTTACTAAAGTTAATAAGCCTGGTTCAAAACCTTTTAAGAAACAGATAAAGAAGACAGTTAAAAAATCAGGCAGTGGTTCAGAATATTCTAAATCTTCAAAAATTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCTCCTCCATACCAGCCGCATGGGGTAAAGATGTTATATAAGGGGAGACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGAGTACATGCAGAAAGATAAATTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGCTTGGAAGAAATCATGTAATCCAGAATTTGAAAGATTGTGATTTTACTCCAATCTATGACTGGTACCAAAGTGAGAAGGACAAGAAGAAACAAATGACTACAGAAGAGAAGAAGGCTTTGAAGGAAGAGAAAATGAAACTAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGAGGAGAGCACCCCAAGATGGGAAAATTGAAAAAACGCATTCATCCAGGTGATATCACAATTAATATTGCAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGCGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACTTGGTTAGCCTATTGGAGTGACCCTATCAATCCCAAGCTATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCCTTGAAGGGGCAGAGCGACAAGGAAAAGTATGAGAAAGCTAGGACGTTAAAGGATTATATAGGGAATATTAGGTCTGCATACACAAAAGATTTTACCAGTAAAGATATTACAAAGCAGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAACCCCCCAACAAACTTAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTACGAAAATACGGTTGAGGTTGAGCTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGATAAAAAGCCTGGTGATGATCTTTTCGATAAGCTGGATACAAGTAAACTAAATGCTCATCTTAAGGAACTCATGCCCGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCGATCACATTGGATGTTATGTTGAATAAGGAAACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAACATGCAAATAAACAGGTTGCTATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCATACTGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAAGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGAAAGCCCCCTTCGAAGAGTTCAGATGGAAAGAGAAAAAAGAACTTGAGTCCCGAAATGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAAAGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCGAAATTCTGCTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA

>Glyma12g01630.1   sequence type=predicted peptide   gene model=Glyma12g01630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVETSDKPNLPHDFEDDDDGPVIYKRYSSSKKNQSHSEVRKSSSHSHDGQSYRQISNAPSSSGQTSCLQKGNTVPSAKPSPVKPSVGISKASKSLVNTSSTKLPVANSKSPSLGDRQKMSVDIKGEPKTIEHHAKNFVEDSEDDEDNKPLSFRLKNSNHDNKVTSVIAKKSSEDSDDDVPLAKKLYRNSNLGTTSSNHDDSNQKKPISKIQKEQKNGSGMSNKLDRPSPLPAKRPLDNSNSLHPSVKKSKVLDPVASIKSKAVSVKHELKVEDDDDDDDIPISQRIKKSAMSGDKSSSMKKVLTKVTKVNKPGSKPFKKQIKKTVKKSGSGSEYSKSSKILPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKDKKKQMTTEEKKALKEEKMKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPGDITINIAKDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARTLKDYIGNIRSAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDVMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHTAQMSKLTEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKRKKNLSPEMLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF*







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