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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G63440 | AT | Annotation by Michelle Graham. TAIR10: cytokinin oxidase/dehydrogenase 6 | chr3:23424291-23426265 FORWARD LENGTH=533 | SoyBase | E_val: 0 | ISS |
| GO:0009690 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process | SoyBase | N/A | ISS |
| GO:0009823 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin catabolic process | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008762 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016614 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors | SoyBase | N/A | ISS |
| GO:0019139 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cytokinin dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG1231 | KOG | Proteins containing the FAD binding domain | JGI | ISS | |
| PTHR13878 | Panther | GULONOLACTONE OXIDASE | JGI | ISS | |
| PTHR13878:SF18 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01565 | PFAM | FAD binding domain | JGI | ISS | |
| PF09265 | PFAM | Cytokinin dehydrogenase 1, FAD and cytokinin binding | JGI | ISS | |
| UniRef100_G7JVV7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin oxidase n=1 Tax=Medicago truncatula RepID=G7JVV7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C730 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C730 related cluster n=1 Tax=unknown RepID=UPI000233C730 | SoyBase | E_val: 0 | ISS |
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Glyma12g01390 not represented in the dataset |
Glyma12g01390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g35950 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g011400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01390.2 sequence type=transcript gene model=Glyma12g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTATTGTTATAACATAACATGCACTAATTGTTTGTGGTTACCACTGTTTGAAAAAGAAAAGTTGAAGAAGATTTGTGTGATCTGTCTTTGATGTTACTTTTCCTCTTCAACTTGGCTTCTGTGTCACTCACTGTGTGATGCCTTTGGCGTCTCTCTTCATAACAAGTAAGCAGTCCACATACGCATTCTCCTCATCGTAATGTATGTCATAACTGATCAACAAACAAGGCTACGTTGACCAAGCCACCCACAAACTCCTTTAAATTCTGGCCCAAACCCTTAAGTTCCTCCACTCTCCAATCCATCACTTTCTTCTTTTCCTCCTCGTGCTCACAAAGCACCTACAAAATCACGCTGCTTAATTATTCCTTCGACTACCATCATACCTTCTCAACAGAAGAAAAAAAATAAAAATAAAAAAAATGAGATACCATTACCCACCTCGTAATAACATTCTTGGAGAACACAACATTCTGTTCCTCAAAAGCTTCACGATATTGTTCCTTAGTTGCATAGCCATTCGGCTTAACTTGTGTCTTTCCAGCATCCCCTCTTCACTGAAATCACTTCCCCTAGGAGGGCATTTAAATTTTGATGAAGTTAGCCTAAGCCATGCAGCAAGGGACTTCGGCAACAGGTACCAATATCATCCAATGGCAGTGCTGCAACCAGAATCAGTTTCTGATATCGCATCCACCATAAAGCATATCTGGCTGATGGGTCCTAGCTCGCACCTCACGGTTGCAGCGAGGGGCCACGGCCACTCGCTGCAGGGACAGGCTCAAGCCCATGGAGGAGTTGTGATAAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTTGATGTGGGAAACTCTCCTCCATACGTGGATGTCTCAGGTGGCGAATTGTGGATAAACATATTGCATGAGACTCTAAGGTACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGAGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAGGCATTTAGGCATGGTCCCCAAATAAGTAATGTTCAGCAGCTCGAGATTGTTACAGGAACAGGGGAGGTGGTGAACTGTTCCGCAGAGAATAATGGGGATCTCTTTCACAGCGTTCTTGGGGGGCTTGGCCAATTTGGCATTATAACCCGGGCAAGAATTGTCCTGGAGCCAGCACCTGCCATGGTAAAATGGATTAGAGTGCTGTACTCAGATTTCACAGCATTCACAAGAGACCAAGAAAGGTTAATATCTGCAGAAAACACCTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGTTAAATAACTGGAGATTATCCTTCAACCCACAAGACCCGGTTCAAGCTAGTCATTTCAAGTCGGATGGAAGAACTCTCTTCTGTCTTGAAATGGCCAAATACTTCAACGTGGAAGAAATCGATGCAGCAAATCAGGAAGTTGAGGAACATTTGTCCCGATTAAGCTACATCCCGTCGACCCTTTTTTCAACAGAAGTCACATTTGTTGATTTCTTAGACAGGGTGCACATATCAGAGGTCAAGTTGCGTTCAAAAGGCTTGTGGGATGTTCCACATCCGTGGCTCAATCTTCTAATACCCAAAAGCCAAATACACAACTTCGCAGAAGTCGTCTTCGGGAATATCCTTACAGAAACTAGCAATGGCCCCGTCCTTATCTACCCAGTAAACAAATCAAAGTGGGACAACAGAACTTCTGTTGTGATTCCAGAGGAAGCTATTTTCTACTTAGTGGCATTTCTTACATCTGCAGTTCCATCTTCAACTGGAACTGACGGCCTAGAGCACATACTAAGTCAGAACAAAAGAATTTTAGAATTCTGTGAAAGTGCACAACTTGGAGTGAAGCAGTATTTGCCTCACTACAACACACAGCAAGAATGGAGGGCCCATTTTGGTCCTCACTGGGAGACTTTTCTGCAGAGAAAGTCTGTTTATGATCCATTAGCAATACTCGCTCCTGGCCAACGTATTTTTCAAAAAGCAATAACCTTCTCATGACCACTTTTTATTATTAATCAATAATCTGAAAAAGAAAAGTCCTTCATGGCATTGCCAAAATGAAAGAAAATCTTGTAAGTATGATCCAGACAGGTTTGGACACAGACCATAAAGAATGCAAAGGAAGAAGGTTCATTGATAGTAGAGAAAAAAAGTTGTCAGTGTATGAATGTATGATTACTGATGGGAAAATTGCCTTACATGCTGAGTGTAGCACCAAGGCAGCAGGGTCCGGCTGAGATTAGGTCAACAAAACACATTAGTTATTGTAGGGTTTCCAAAGAACTTATAAATATTATCAGCATTAGAACCAACGTATATACTTTCAATTTTGTAAATACTCCTTTATATATTCTCTATCTCTCATGTAGCCAAATTCATTAAATTATAAATACAGA
>Glyma12g01390.1 sequence type=CDS gene model=Glyma12g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATACCATTACCCACCTCGTAATAACATTCTTGGAGAACACAACATTCTGTTCCTCAAAAGCTTCACGATATTGTTCCTTAGTTGCATAGCCATTCGGCTTAACTTGTGTCTTTCCAGCATCCCCTCTTCACTGAAATCACTTCCCCTAGGAGGGCATTTAAATTTTGATGAAGTTAGCCTAAGCCATGCAGCAAGGGACTTCGGCAACAGGTACCAATATCATCCAATGGCAGTGCTGCAACCAGAATCAGTTTCTGATATCGCATCCACCATAAAGCATATCTGGCTGATGGGTCCTAGCTCGCACCTCACGGTTGCAGCGAGGGGCCACGGCCACTCGCTGCAGGGACAGGCTCAAGCCCATGGAGGAGTTGTGATAAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTTGATGTGGGAAACTCTCCTCCATACGTGGATGTCTCAGGTGGCGAATTGTGGATAAACATATTGCATGAGACTCTAAGGTACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGAGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAGGCATTTAGGCATGGTCCCCAAATAAGTAATGTTCAGCAGCTCGAGATTGTTACAGGAACAGGGGAGGTGGTGAACTGTTCCGCAGAGAATAATGGGGATCTCTTTCACAGCGTTCTTGGGGGGCTTGGCCAATTTGGCATTATAACCCGGGCAAGAATTGTCCTGGAGCCAGCACCTGCCATGGTAAAATGGATTAGAGTGCTGTACTCAGATTTCACAGCATTCACAAGAGACCAAGAAAGGTTAATATCTGCAGAAAACACCTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGTTAAATAACTGGAGATTATCCTTCAACCCACAAGACCCGGTTCAAGCTAGTCATTTCAAGTCGGATGGAAGAACTCTCTTCTGTCTTGAAATGGCCAAATACTTCAACGTGGAAGAAATCGATGCAGCAAATCAGGAAGTTGAGGAACATTTGTCCCGATTAAGCTACATCCCGTCGACCCTTTTTTCAACAGAAGTCACATTTGTTGATTTCTTAGACAGGGTGCACATATCAGAGGTCAAGTTGCGTTCAAAAGGCTTGTGGGATGTTCCACATCCGTGGCTCAATCTTCTAATACCCAAAAGCCAAATACACAACTTCGCAGAAGTCGTCTTCGGGAATATCCTTACAGAAACTAGCAATGGCCCCGTCCTTATCTACCCAGTAAACAAATCAAAGTAA >Glyma12g01390.2 sequence type=CDS gene model=Glyma12g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATACCATTACCCACCTCGTAATAACATTCTTGGAGAACACAACATTCTGTTCCTCAAAAGCTTCACGATATTGTTCCTTAGTTGCATAGCCATTCGGCTTAACTTGTGTCTTTCCAGCATCCCCTCTTCACTGAAATCACTTCCCCTAGGAGGGCATTTAAATTTTGATGAAGTTAGCCTAAGCCATGCAGCAAGGGACTTCGGCAACAGGTACCAATATCATCCAATGGCAGTGCTGCAACCAGAATCAGTTTCTGATATCGCATCCACCATAAAGCATATCTGGCTGATGGGTCCTAGCTCGCACCTCACGGTTGCAGCGAGGGGCCACGGCCACTCGCTGCAGGGACAGGCTCAAGCCCATGGAGGAGTTGTGATAAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTTGATGTGGGAAACTCTCCTCCATACGTGGATGTCTCAGGTGGCGAATTGTGGATAAACATATTGCATGAGACTCTAAGGTACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGAGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAGGCATTTAGGCATGGTCCCCAAATAAGTAATGTTCAGCAGCTCGAGATTGTTACAGGAACAGGGGAGGTGGTGAACTGTTCCGCAGAGAATAATGGGGATCTCTTTCACAGCGTTCTTGGGGGGCTTGGCCAATTTGGCATTATAACCCGGGCAAGAATTGTCCTGGAGCCAGCACCTGCCATGGTAAAATGGATTAGAGTGCTGTACTCAGATTTCACAGCATTCACAAGAGACCAAGAAAGGTTAATATCTGCAGAAAACACCTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGTTAAATAACTGGAGATTATCCTTCAACCCACAAGACCCGGTTCAAGCTAGTCATTTCAAGTCGGATGGAAGAACTCTCTTCTGTCTTGAAATGGCCAAATACTTCAACGTGGAAGAAATCGATGCAGCAAATCAGGAAGTTGAGGAACATTTGTCCCGATTAAGCTACATCCCGTCGACCCTTTTTTCAACAGAAGTCACATTTGTTGATTTCTTAGACAGGGTGCACATATCAGAGGTCAAGTTGCGTTCAAAAGGCTTGTGGGATGTTCCACATCCGTGGCTCAATCTTCTAATACCCAAAAGCCAAATACACAACTTCGCAGAAGTCGTCTTCGGGAATATCCTTACAGAAACTAGCAATGGCCCCGTCCTTATCTACCCAGTAAACAAATCAAAGTGGGACAACAGAACTTCTGTTGTGATTCCAGAGGAAGCTATTTTCTACTTAGTGGCATTTCTTACATCTGCAGTTCCATCTTCAACTGGAACTGACGGCCTAGAGCACATACTAAGTCAGAACAAAAGAATTTTAGAATTCTGTGAAAGTGCACAACTTGGAGTGAAGCAGTATTTGCCTCACTACAACACACAGCAAGAATGGAGGGCCCATTTTGGTCCTCACTGGGAGACTTTTCTGCAGAGAAAGTCTGTTTATGATCCATTAGCAATACTCGCTCCTGGCCAACGTATTTTTCAAAAAGCAATAACCTTCTCATGA
>Glyma12g01390.1 sequence type=predicted peptide gene model=Glyma12g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRYHYPPRNNILGEHNILFLKSFTILFLSCIAIRLNLCLSSIPSSLKSLPLGGHLNFDEVSLSHAARDFGNRYQYHPMAVLQPESVSDIASTIKHIWLMGPSSHLTVAARGHGHSLQGQAQAHGGVVINMESLKVPEMQVHVDVGNSPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVQQLEIVTGTGEVVNCSAENNGDLFHSVLGGLGQFGIITRARIVLEPAPAMVKWIRVLYSDFTAFTRDQERLISAENTFDYIEGFVIINRTGLLNNWRLSFNPQDPVQASHFKSDGRTLFCLEMAKYFNVEEIDAANQEVEEHLSRLSYIPSTLFSTEVTFVDFLDRVHISEVKLRSKGLWDVPHPWLNLLIPKSQIHNFAEVVFGNILTETSNGPVLIYPVNKSK* >Glyma12g01390.2 sequence type=predicted peptide gene model=Glyma12g01390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRYHYPPRNNILGEHNILFLKSFTILFLSCIAIRLNLCLSSIPSSLKSLPLGGHLNFDEVSLSHAARDFGNRYQYHPMAVLQPESVSDIASTIKHIWLMGPSSHLTVAARGHGHSLQGQAQAHGGVVINMESLKVPEMQVHVDVGNSPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFRHGPQISNVQQLEIVTGTGEVVNCSAENNGDLFHSVLGGLGQFGIITRARIVLEPAPAMVKWIRVLYSDFTAFTRDQERLISAENTFDYIEGFVIINRTGLLNNWRLSFNPQDPVQASHFKSDGRTLFCLEMAKYFNVEEIDAANQEVEEHLSRLSYIPSTLFSTEVTFVDFLDRVHISEVKLRSKGLWDVPHPWLNLLIPKSQIHNFAEVVFGNILTETSNGPVLIYPVNKSKWDNRTSVVIPEEAIFYLVAFLTSAVPSSTGTDGLEHILSQNKRILEFCESAQLGVKQYLPHYNTQQEWRAHFGPHWETFLQRKSVYDPLAILAPGQRIFQKAITFS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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