Glyma12g01380 - SoyBase

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Report for Sequence Feature Glyma12g01380

Feature Type:	gene_model
Chromosome:	Gm12
Start:	817497
stop:	821309
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41540	AT	Annotation by Michelle Graham. TAIR10: 6-phosphogluconate dehydrogenase family protein \| chr2:17326801-17328654 FORWARD LENGTH=462	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006072	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process	SoyBase	N/A	ISS
GO:0009413	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to flooding	SoyBase	N/A	ISS
GO:0046168	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009331	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: glycerol-3-phosphate dehydrogenase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004367	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG2711	KOG	Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase	JGI		ISS
PTHR11728	Panther	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	JGI		ISS
PF01210	PFAM	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	JGI		ISS
PF07479	PFAM	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus	JGI		ISS
UniRef100_G7JUR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JUR3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LNZ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNZ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g01380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01380 not represented in the dataset	Glyma12g01380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g01380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g011200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g01380

Limit To All Plant Sequences

>Glyma12g01380.1   sequence type=CDS   gene model=Glyma12g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGAAACGGTGAAGCCGTGACTCACAGTGCATGCTCCAATGGTTCTGTCCAAACTGTAAATGGCAATTTGGAAGAGAAGCTTGATGAACTTCGTCTGCTAATGGGGAAAGTGGATGGTGATCCACTGAGAATAGTTGGTGTTGGAGCTGGGGCTTGGGGTAGTGTATTCACAGCTATGTTGCAGGAGGCTTATGGTGGTTTAAGAGAAAAGGTTCTGATTAGGATATGGAGAAGACCCGGAAGAACGGTTGATAGAGCCTTGGCTAAGCATTTGTTTGAGGTTATCAATTCGAGGGAGGATGTATTGAGAAGGCTGATTAGGCGATGTGCGTATTTGAAATATGTTGAGGGAAGATTGGGTGATCGTGTCCTTTATGCAGATGAGATTTTGAAAGATGGATTTTGCTTGAACATGATTGACACCCCTCTTTGCCCTCTCAAGGTTGTCACAAACCTGCAGGAGGCTGTGTGGGACGCAGATATTGTGATTAATGGCTTGCCATCAACGGAAACCCGTGAGGTATTTGAAGAAATTAGCAAGTACTGGAAAGAGAGAATCACAGTGCCTGCCATCATTTCCTTAGCAAAGGGTGTGGAGGCAGAATTGGGGCCTGAACCACGGATAATAACTCCCACGCTAATGATCAATCAAGCAACTGGAGTCCCCATTGAGAACATCCTTTACCTTGGAGGTCCTAACATTGCCTCAGAAATTTACAACAAGGAATATGCAAACGCTAGGATATGTGGGGCAGAAAAGTGGAGGAAACCACTGGCAAAATTTTTGAGGCAGCCCCACTTTATAGTGTGGGATAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGATTAAAGAATGTATATGCTATTGGAGCAGGAATGGTAGCCGCTTTAACAAATGAGAGTGCCACCAGCAAGTCAGTGTACTTTGCTCACTGCACATCTGAGATGATTTTTATAACTCATCTATTGGCAGAAGAACCAGAAAGACTGGCAGGGCCTCTCTTGGCTGATACGTATGTAACGTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGGGAGTCTCTGCAGTTAAAGCATTCTATGAGCTACTTAGTCAGTCCAGCTTAAATGTCCTAAATCCTGAAGAAAACGAGCTCGTTGCCCCAGTGGAGCTTTGCCCCATCTTGAAGATGTTATATAAAATACTAATAATTAGGGAATCTCCAGTAGAGGCAATTCTTCAAGCATTGCGAGATGAGACAATGAATGATCCTCGTGACCGTATTGAGATTGCCCAAAGCCATGTGTTTTACAGACCATCACTTCTTGGTCACCAGCCTTAA

Predicted protein sequences of Glyma12g01380

Limit To All Plant Sequences

>Glyma12g01380.1   sequence type=predicted peptide   gene model=Glyma12g01380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGNGEAVTHSACSNGSVQTVNGNLEEKLDELRLLMGKVDGDPLRIVGVGAGAWGSVFTAMLQEAYGGLREKVLIRIWRRPGRTVDRALAKHLFEVINSREDVLRRLIRRCAYLKYVEGRLGDRVLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETREVFEEISKYWKERITVPAIISLAKGVEAELGPEPRIITPTLMINQATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPERLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGTIQGVSAVKAFYELLSQSSLNVLNPEENELVAPVELCPILKMLYKILIIRESPVEAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGHQP*

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