Glyma12g01250 - SoyBase

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Report for Sequence Feature Glyma12g01250

Feature Type:	gene_model
Chromosome:	Gm12
Start:	707309
stop:	712311
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45900	AT	Annotation by Michelle Graham. TAIR10: ThiF family protein \| chr5:18615304-18618436 FORWARD LENGTH=697	SoyBase	E_val: 0	ISS
GO:0006497	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein lipidation	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0019779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: APG8 activating enzyme activity	SoyBase	N/A	ISS
KOG2337	KOG	Ubiquitin activating E1 enzyme-like protein	JGI		ISS
PTHR10953	Panther	UBIQUITIN-ACTIVATING ENZYME E1	JGI		ISS
PF00899	PFAM	ThiF family	JGI		ISS
UniRef100_C7G303	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Autophagy protein ATG7 n=1 Tax=Glycine max RepID=C7G303_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LNY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNY5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g01250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01250 not represented in the dataset	Glyma12g01250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g01250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g010000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g01250

Limit To All Plant Sequences

>Glyma12g01250.1   sequence type=CDS   gene model=Glyma12g01250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCTTTGCTGCAATTCGCACCGATGCAGAGCTCCGTTGATGAGGGTTTCTGGCACCGTTTGTCTTCTTTGAAGCTCAACAAGCTTGGCATTGACCATTCTCCAATTCCCTTATTCGGTTTTTATGCACCGTGCTCTCACTCTCAAGTATCAAATCATTTAACTGTTTTAGCTGAGTCTTTACCTTCTGAATTGAGTGAGGCATCATTAATCCCTGAACCCAGCCGCGGCAACCGGAACAGGTGTTCTGTTCCAGGGATACTTTACAACACTAATACTGTGGAAAGCTTCCATGCACTTGATAAGAGTGACCTGTTGAAGAAAGAGGCAGCAAAGATATGGGATGACATTCTAACTGGAAAAGCTGTGGAGGACTGTTCAGTACTTTCAACATTCCTTGTTATTTCTTTTGCTGACTTGAAAAAGTGGACTTTCAACTACTGGTTTGCTTTCCCGGCTCTGATGCTTGATCCTCCTGCCACTGTGGTTAATCTAAAGCCAGCTTCTCAGTGGTTCAGCGCAGCAGAGGCTGAATCACTCTCTGCAGCTTGTAACGAGTGGCGTAGCTCAAAATCAAAAACAGATGTCCCGTTTTTTTTAGTCACTATAGATCCAAACTCACGTGCTACTGTTAGGCTTCTGAAGGACTGGGAAGCATGTCAGAGCAATGCTCACAAGATCCTTTTTGGATTTTATGACCCATGTCATCTACCAAATAATCCTGGATGGCCTCTTCGCAACTTCTTAGCACTTATTTCTGCGAGGTGGAATCTCAACTCTGTTCAATTTTTCTGCTACAGAGAGAACCGTGGTTTTGCAGATATGAGGTTGTCCCTTGTTGGTGAAGCACTGATAACAGTTCCACAAGGGTGGAAAGACACTGTGCCTAGTGCAGTTGGATGGGAACTTAATAAGGGGAGAAAAGCTCCTAGGTGTATAAGCCTTGCGCAGTCCATGGATCCAACCAGGTTGGCCATATCTGCTGCAGATTTGAATTTAAAGCTGATGAGGTGGCGTGCTTTGCCTTCTTTAAACTTGAATGCCTTATCTTCCATGAAGTGTCTTCTCCTCGGAGCTGGAACACTTGGATGCCAGGTTGCGCGCATGCTTATGGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATGGTGGGGAATTTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTGGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAAAGCCAGGAACAGGACAGTGTGCTTGATGATTGTAAACGTTTGTGTGATTTAATTGATGCTCATGATTCCGTTTTTTTATTGACTGATACAAGGGAAAGTCGATGGCTCCCAACACTTCTCTGTGCCAATACTAACAAGATTACTGTTACTGCTGCACTGGGGTTTGATAGTTTCTTGGTTATGCGCCATGGAGCTGGTCCTTTATCTGCGGATATGCCAGTAAATAATGCAAATGGAAAACATAGATTGGGCTGTTATTTCTGCAATGATGTCGTGGCACCAACCGATTCAACATCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCAGGGCTAGCTCCTATTGCTTCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTTTGCATCATCCTCAAGGGATATTTGCCGAAGGTGATATTAACAACAGTGTCACTGGAGCTACTGAGCAACCTCTTGGTATTTTGCCTCATCAGATTCGTGGTTCCCTTTCTCAATTTTCTCAAATGACCCTTATAGGTTACTCCTCCTCCAGCTGCACAGCCTGTAGTCATACAGTTGTATCAGAATATCGAAACCAAGGAATGGAGTTCATACTTCAAGCAATTAATTATCCTACCTTCCTAGAGGATGTCACTGGACTGACAGAGTTGATGAAATCGGCCACCTCGTTGTCATTGGATTGGGACAAGGAGATAGACGAGGAGGAGGACTGTGTTGAAATTCAATAA

Predicted protein sequences of Glyma12g01250

Limit To All Plant Sequences

>Glyma12g01250.1   sequence type=predicted peptide   gene model=Glyma12g01250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEALLQFAPMQSSVDEGFWHRLSSLKLNKLGIDHSPIPLFGFYAPCSHSQVSNHLTVLAESLPSELSEASLIPEPSRGNRNRCSVPGILYNTNTVESFHALDKSDLLKKEAAKIWDDILTGKAVEDCSVLSTFLVISFADLKKWTFNYWFAFPALMLDPPATVVNLKPASQWFSAAEAESLSAACNEWRSSKSKTDVPFFLVTIDPNSRATVRLLKDWEACQSNAHKILFGFYDPCHLPNNPGWPLRNFLALISARWNLNSVQFFCYRENRGFADMRLSLVGEALITVPQGWKDTVPSAVGWELNKGRKAPRCISLAQSMDPTRLAISAADLNLKLMRWRALPSLNLNALSSMKCLLLGAGTLGCQVARMLMAWGVRKITLVDNGRVAMSNPLRQSLYTLDDCLNGGEFKATAAVESLKRIFPAVEAEGIVMAIPMPGHPVQSQEQDSVLDDCKRLCDLIDAHDSVFLLTDTRESRWLPTLLCANTNKITVTAALGFDSFLVMRHGAGPLSADMPVNNANGKHRLGCYFCNDVVAPTDSTSNRTLDQQCTVTRPGLAPIASALAVELLVGILHHPQGIFAEGDINNSVTGATEQPLGILPHQIRGSLSQFSQMTLIGYSSSSCTACSHTVVSEYRNQGMEFILQAINYPTFLEDVTGLTELMKSATSLSLDWDKEIDEEEDCVEIQ*

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