Glyma12g01150 - SoyBase

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Report for Sequence Feature Glyma12g01150

Feature Type:	gene_model
Chromosome:	Gm12
Start:	659148
stop:	663005
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09680	AT	Annotation by Michelle Graham. TAIR10: reduced lateral root formation \| chr5:2999362-3000185 REVERSE LENGTH=211	SoyBase	E_val: 8.00E-87	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0536	KOG	Flavohemoprotein b5+b5R	JGI		ISS
PTHR19370	Panther	NADH-CYTOCHROME B5 REDUCTASE	JGI		ISS
PF00173	PFAM	Cytochrome b5-like Heme/Steroid binding domain	JGI		ISS
UniRef100_B9RVM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavohemoprotein B5/b5r, putative n=1 Tax=Ricinus communis RepID=B9RVM7_RICCO	SoyBase	E_val: 9.00E-91	ISS
UniRef100_I1LNX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNX3_SOYBN	SoyBase	E_val: 3.00E-159	ISS

Expression Patterns of Glyma12g01150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01150 not represented in the dataset	Glyma12g01150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g01150

Paralog	Evidence	Comments
Glyma09g36160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g01150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g009100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g01150

Limit To All Plant Sequences

>Glyma12g01150.4   sequence type=transcript   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACTAGGTTTGAATTGGTCCACAGGCCCTCTTGTTTCTTTGAAGAGACACAGATGACTCTCTAATCTCTATCAATAATTCAATATCATCATAAATACCGCGGACACACATTGGATAGGGGGCAGAGCTTGAATTGAATCATCTCCCACACCCATCAGCCATCACCATCTCCGATGAGATGTTCCTTCATTAGGCCTATCGTGGGCTTTTATTTGTTGGGCTCTAAGACTTTACCTACGTGGGCTTTTGTTATAGGCCCACAGAAGCCGGCCCATGGTGTAAGGTGAAAGCCGTAATTCAACTTTCTCAGGGGTGGGTGGATGGGTGTTTGTTTCAATTCGATTTCTTCTCTTCTCTGCAGAAAATCGAATCAATCGATGGATGCTTTAATTTCGTGTGGTTATTGAGGAAATTTCATATCCGCAAGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGGTAATAACAAATCCCTCGCTAGAGCCTAGAACTAGAATTAGATTCTGCCTGTGATCATATATTATATTACGAAATTCAATTGCAGCTGCTGCTGAATCGTAATCGATCTTATATCTACACTCTACCATGGACATTGATGATGATTTCACATTTTGTCAGGATAATGCTTTACCCAATCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGAAGATTTCATTCTAATAATGCATAAACACATGAAGATGGCTTGGCTCCAATCCGTTATACCTCTTCATGGGCCCTCTCTATTTACTGACCAGGGGCCATCAAGCAAGGAGGAATAAATTCTGTAGGTATACACGTTTCTGTTTAAAGATCTCAATGGGAGTTTGTTCTACAATTATGGATGAGTACAGTTATCTTGTAAACTAGAAATTTGGATTAACAATGTAACAATTCTCTGTGTGATGCATTGCCATTTTATTTTTTTGGGTGATTTTATTGCCAATATTTTAGATAAAGGAAACTGTAGCATATATCACCATTCATGGCGCTGAGTTGCTTTCGGATGGTAAAGGTGAGACTCACTCACACCTATGCTAACGAATAACATCAAGATTTAGATGGGTCATGACGGCTAATGAAACATGAGCTGCTTAAAACAAACCCCTGGAAGTGTCAGCTATTTCCCTTTTGATTACTTATAAGGA

>Glyma12g01150.5   sequence type=transcript   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACTAGGTTTGAATTGGTCCACAGGCCCTCTTGTTTCTTTGAAGAGACACAGATGACTCTCTAATCTCTATCAATAATTCAATATCATCATAAATACCGCGGACACACATTGGATAGGGGGCAGAGCTTGAATTGAATCATCTCCCACACCCATCAGCCATCACCATCTCCGATGAGATGTTCCTTCATTAGGCCTATCGTGGGCTTTTATTTGTTGGGCTCTAAGACTTTACCTACGTGGGCTTTTGTTATAGGCCCACAGAAGCCGGCCCATGGTGTAAGGTGAAAGCCGTAATTCAACTTTCTCAGGGGTGGGTGGATGGGTGTTTGTTTCAATTCGATTTCTTCTCTTCTCTGCAGAAAATCGAATCAATCGATGGATGCTTTAATTTCGTGTGGTTATTGAGGAAATTTCATATCCGCAAGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGGTAATAACAAATCCCTCGCTAGAGCCTAGAACTAGAATTAGATTCTGCCTGTGATCATATATTATATTACGAAATTCAATTGCAGCTGCTGCTGAATCGTAATCGATCTTATATCTACACTCTACCATGGACATTGATGATGATTTCACATTTTGTCAGGTCAGTGCACCTGTTGATGTTGAAACAAACAAGCTTGCTTCAGATATAGCTGATATTTCCATTAAAGAAGAATCTTCAAATGCATCTAATACTGCTCAGGATAATGCTTTACCCAATCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGAAGATTTCATTCTAATAATGCATAAACACATGAAGATGGCTTGGCTCCAATCCGTTATACCTCTTCATGGGCCCTCTCTATTTACTGACCAGGGGCCATCAAGCAAGGAGGAATAAATTCTGTAGGTATACACGTTTCTGTTTAAAGATCTCAATGGGAGTTTGTTCTACAATTATGGATGAGTACAGTTATCTTGTAAACTAGAAATTTGGATTAACAATGTAACAATTCTCTGTGTGATGCATTGCCATTTTATTTTTTTGGGTGATTTTATTGCCAATATTTTAGATAAAGGAAACTGTAGCATATATCACCATTCATGGCGCTGAGTTGCTTTCGGATGGTAAAGGTGAGACTCACTCACACCTATGCTAACGAATAACATCAAGATTTAGATGGGTCATGACGGCTAATGAAACATGAGCTGCTTAAAACAAACCCCTGGAAGTGTCAGCTATTTCCCTTTTGATTACTTATAAGGA

>Glyma12g01150.6   sequence type=transcript   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACTAGGTTTGAATTGGTCCACAGGCCCTCTTGTTTCTTTGAAGAGACACAGATGACTCTCTAATCTCTATCAATAATTCAATATCATCATAAATACCGCGGACACACATTGGATAGGGGGCAGAGCTTGAATTGAATCATCTCCCACACCCATCAGCCATCACCATCTCCGATGAGATGTTCCTTCATTAGGCCTATCGTGGGCTTTTATTTGTTGGGCTCTAAGACTTTACCTACGTGGGCTTTTGTTATAGGCCCACAGAAGCCGGCCCATGGTGTAAGGTGAAAGCCGTAATTCAACTTTCTCAGGGGTGGGTGGATGGGTGTTTGTTTCAATTCGATTTCTTCTCTTCTCTGCAGAAAATCGAATCAATCGATGGATGCTTTAATTTCGTGTGGTTATTGAGGAAATTTCATATCCGCAAGGGCAGAGAGTAGAAGGAAGAAGAGAGAAAGAGGGAAGCTGCTGCTGAATCGTAATCGATCTTATATCTACACTCTACCATGGACATTGATGATGATTTCACATTTTGTCAGGTCAGTGCACCTGTTGATGTTGAAACAAACAAGCTTGCTTCAGATATAGCTGATATTTCCATTAAAGAAGAATCTTCAAATGCATCTAATACTGCTCAGGATAATGCTTTACCCAATCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGAAGATTTCATTCTAATAATGCATAAACACATGAAGATGGCTTGGCTCCAATCCGTTATACCTCTTCATGGGCCCTCTCTATTTACTGACCAGGGGCCATCAAGCAAGGAGGAATAAATTCTGTAGGTATACACGTTTCTGTTTAAAGATCTCAATGGGAGTTTGTTCTACAATTATGGATGAGTACAGTTATCTTGTAAACTAGAAATTTGGATTAACAATGTAACAATTCTCTGTGTGATGCATTGCCATTTTATTTTTTTGGGTGATTTTATTGCCAATATTTTAGATAAAGGAAACTGTAGCATATATCACCATTCATGGCGCTGAGTTGCTTTCGGATGGTAAAGGTGAGACTCACTCACACCTATGCTAACGAATAACATCAAGATTTAGATGGGTCATGACGGCTAATGAAACATGAGCTGCTTAAAACAAACCCCTGGAAGTGTCAGCTATTTCCCTTTTGATTACTTATAAGGA

Coding sequences of Glyma12g01150

Limit To All Plant Sequences

>Glyma12g01150.2   sequence type=CDS   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTGATGATGATTTCACATTTTGTCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGA

>Glyma12g01150.4   sequence type=CDS   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTGATGATGATTTCACATTTTGTCAGGATAATGCTTTACCCAATCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGA

>Glyma12g01150.5   sequence type=CDS   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTGATGATGATTTCACATTTTGTCAGGTCAGTGCACCTGTTGATGTTGAAACAAACAAGCTTGCTTCAGATATAGCTGATATTTCCATTAAAGAAGAATCTTCAAATGCATCTAATACTGCTCAGGATAATGCTTTACCCAATCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGA

>Glyma12g01150.6   sequence type=CDS   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTGATGATGATTTCACATTTTGTCAGGTCAGTGCACCTGTTGATGTTGAAACAAACAAGCTTGCTTCAGATATAGCTGATATTTCCATTAAAGAAGAATCTTCAAATGCATCTAATACTGCTCAGGATAATGCTTTACCCAATCAGAAGGAGGCTACCGTTGGTTCTTTGTCTTTCACTGTAACTAGCACAGCTTCTAGTCGGCCAAATGAATCCACCACAAAATTAGTACCAACTCAGGCTAACATTTCGTCTCTAAAGTCACCGGCACAGAAGAATTCCGTTAAGAAGCCAACGGTTCGGGCCAAAGTTCCTTTTGAGAAAGGCTACAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCAATAAATACCATGCTTGGGTTAATGCTGAATTCTTATTGGAAAAATGCTTTGTGGGTACCTTAGATGAAGGTCAGTGA

Predicted protein sequences of Glyma12g01150

Limit To All Plant Sequences

>Glyma12g01150.2   sequence type=predicted peptide   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIDDDFTFCQKEATVGSLSFTVTSTASSRPNESTTKLVPTQANISSLKSPAQKNSVKKPTVRAKVPFEKGYSQMDWLKLTQTHPDLAGLKGQSNKRLISMDEVRKHQTEGQMWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLEKCFVGTLDEGQ*

>Glyma12g01150.4   sequence type=predicted peptide   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIDDDFTFCQDNALPNQKEATVGSLSFTVTSTASSRPNESTTKLVPTQANISSLKSPAQKNSVKKPTVRAKVPFEKGYSQMDWLKLTQTHPDLAGLKGQSNKRLISMDEVRKHQTEGQMWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLEKCFVGTLDEGQ*

>Glyma12g01150.5   sequence type=predicted peptide   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIDDDFTFCQVSAPVDVETNKLASDIADISIKEESSNASNTAQDNALPNQKEATVGSLSFTVTSTASSRPNESTTKLVPTQANISSLKSPAQKNSVKKPTVRAKVPFEKGYSQMDWLKLTQTHPDLAGLKGQSNKRLISMDEVRKHQTEGQMWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLEKCFVGTLDEGQ*

>Glyma12g01150.6   sequence type=predicted peptide   gene model=Glyma12g01150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIDDDFTFCQVSAPVDVETNKLASDIADISIKEESSNASNTAQDNALPNQKEATVGSLSFTVTSTASSRPNESTTKLVPTQANISSLKSPAQKNSVKKPTVRAKVPFEKGYSQMDWLKLTQTHPDLAGLKGQSNKRLISMDEVRKHQTEGQMWTVLKGRVYNISPYMKFHPGGVDMLMKAVGKDCTSLFNKYHAWVNAEFLLEKCFVGTLDEGQ*

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