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Report for Sequence Feature Glyma12g01145

Feature Type:gene_model
Chromosome:Gm12
Start:655402
stop:656301
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g01145
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13245AT Annotation by Michelle Graham. TAIR10: ROTUNDIFOLIA like 17 | chr1:4525852-4525977 REVERSE LENGTH=41 SoyBaseE_val: 2.00E-10ISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF08137PFAM DVL family JGI ISS
UniRef100_I1L5L8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L5L8_SOYBN SoyBaseE_val: 1.00E-39ISS
UniRef100_Q6X5T8UniRef Annotation by Michelle Graham. Most informative UniRef hit: DVL5 n=1 Tax=Arabidopsis thaliana RepID=Q6X5T8_ARATH SoyBaseE_val: 1.00E-06ISS

Expression Patterns of Glyma12g01145
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01145 not represented in the dataset
Glyma12g01145 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g01145
ParalogEvidenceComments
Glyma09g36170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g01145 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma12g01145
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g01145
>Glyma12g01145.1   sequence type=CDS   gene model=Glyma12g01145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTAAACATTCCTTCTTCTTTATTATTGAAGGTTGCCAGGAGTGTTGGGGCCCAAGGTGTAACTTTCTGGCCCTCAAAAAGCAATCCACAAAGCATAAAGAGAGCACATAAATTGCCCTATAAAGTACACTACATGTTTCAAAAAGAGCAAAGAGGAAACAAGCAAAGCCCCGGCTTCATCATACATGCAGAGAAGATGAAGATAGAAACTGAAACTATAAGAGTATCCAAAAGAAAGTTAATGGGCAAAGGCATGGGTGCTCTTCTCAAAGAAGGTAGAGGAAGGTTTTATATACTTAGAAGATGTATCATAATGCTTCTATGCTCCCATGATTAG
Predicted protein sequences of Glyma12g01145
>Glyma12g01145.1   sequence type=predicted peptide   gene model=Glyma12g01145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLNIPSSLLLKVARSVGAQGVTFWPSKSNPQSIKRAHKLPYKVHYMFQKEQRGNKQSPGFIIHAEKMKIETETIRVSKRKLMGKGMGALLKEGRGRFYILRRCIIMLLCSHD*






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