SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21640 | AT | Annotation by Michelle Graham. TAIR10: FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr3:7619025-7621097 REVERSE LENGTH=365 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0018208 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-proline modification | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0005528 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FK506 binding | SoyBase | N/A | ISS |
| KOG0543 | KOG | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| PTHR10516 | Panther | FK506 BINDING PROTEIN | JGI | ISS | |
| PTHR10516:SF71 | Panther | TWD1 (TWISTED DWARF 1) (FK506 BINDING / PEPTIDYL-P | JGI | ISS | |
| PF00254 | PFAM | FKBP-type peptidyl-prolyl cis-trans isomerase | JGI | ISS | |
| UniRef100_G7JTJ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 42 kDa peptidyl-prolyl isomerase n=1 Tax=Medicago truncatula RepID=G7JTJ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001D16676 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D16676 related cluster n=1 Tax=unknown RepID=UPI0001D16676 | SoyBase | E_val: 0 | ISS |
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Glyma12g01080 not represented in the dataset |
Glyma12g01080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g36250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g008300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g01080.4 sequence type=transcript gene model=Glyma12g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCAGCTTCACTATTTTAGCCGTCATGTTCTTCCTTTCTTTCTCTCTCTAGAATCTTCTCCGATCAAGTGACACACGATACGAACAAAAGCTGATCCATCCAGTCAACAATGGAGGAAGTTCAAGAGTCTCAAACCCAATCATCGCTCGGTCAAGAAGAGGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAGGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGAGAAGGTCAGCAAACAAATCATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCGTTGGTGCGTGTGGGCTGGGAATTAGGATATGGAGAGGAAGGAAGCTTCTCTTTTCCAAATGTTCCACCCAAGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGGAAAGCTCGCAGTGATATGACTGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCAGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAAAGGCAAGTAAATATGCCCCTCAAGACAAAGCAATTGCTAAAGAATTGAGATTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTCAACCAGTTCCTAAGCCAAGAAATTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCTATGGCCTTGTCACGCTCTTCAAGCGTCAAAGGCATAAATCTGACTAAACAAGAAGACCATTGCTGAGTTGAGTTGACAATTATTTACGTGCATCCTACGAAAGGCCACGTCTTGTGCTACTGAGGAAATAATCATACTTCTACTATTTTGCTTTGCTTGTGGAACAATCAAACGTTGAAAAAGCAGTGCTGATTTCTCTCTTAGGAGTCATCTTTGACAATGCTATCAATCGCTTATGTTGCTTTCAAATAGAGTTTGGTAGTTTGTCTAGAAGGAACTTGTTCTTTAATTTAATCTCTAGTAATTGAAATGGGAAATGATCAGTGTTGCTGAAATCAGATAGTTATTTTCAAAAAGATTTGTAGTGTGCCTTTGAAATTTGAATTAATTCATGATCGGGTAGATCTAATGCATGGATATTTCAAAATTAACAACTTATTTGTATTCTATTCATACCTAAAGAACTTACTAAGTGATGGGACATATGTGGTTAATGTATTAAGTTAAGATTGAATTGGTCGAACAATATTTGAA
>Glyma12g01080.3 sequence type=CDS gene model=Glyma12g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGTTCAAGAGTCTCAAACCCAATCATCGCTCGGTCAAGAAGAGGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAGGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGAGAAGGTCAGCAAACAAATCATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCGTTGGTGCGTGTGGGCTGGGAATTAGGATATGGAGAGGAAGGAAGCTTCTCTTTTCCAAATGTTCCACCCAAGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGGAAAGCTCGCAGTGATATGACTGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCAGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAAAGGCAAGTAAATATGCCCCTCAAGACAAAGCAATTGCTAAAGAATTGAGATTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTCAACCAGTTCCTAAGCCAAGAAATTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCTATGGCCTTGTCACGCTCTTCAAGCGTCAAAGGCATAAATCTGACTAA >Glyma12g01080.4 sequence type=CDS gene model=Glyma12g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAAGTTCAAGAGTCTCAAACCCAATCATCGCTCGGTCAAGAAGAGGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAGGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGAGAAGGTCAGCAAACAAATCATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCGTTGGTGCGTGTGGGCTGGGAATTAGGATATGGAGAGGAAGGAAGCTTCTCTTTTCCAAATGTTCCACCCAAGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGGAAAGCTCGCAGTGATATGACTGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCAGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAAAGGCAAGTAAATATGCCCCTCAAGACAAAGCAATTGCTAAAGAATTGAGATTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTCAACCAGTTCCTAAGCCAAGAAATTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCTATGGCCTTGTCACGCTCTTCAAGCGTCAAAGGCATAAATCTGACTAA
>Glyma12g01080.3 sequence type=predicted peptide gene model=Glyma12g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEVQESQTQSSLGQEEENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVSKQIIKEGHGQKPSKYSTCFFHYRAWAEKSQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDTAREDFLKASKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVTLFKRQRHKSD* >Glyma12g01080.4 sequence type=predicted peptide gene model=Glyma12g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEVQESQTQSSLGQEEENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVSKQIIKEGHGQKPSKYSTCFFHYRAWAEKSQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDTAREDFLKASKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVTLFKRQRHKSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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