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Feature Type: gene_model Chromosome: Gm12 Start: 589135 stop: 591776 Source: JGI Version: Wm82.a1.v1.1 High confidence: yes

A newer version of this gene model can be found here:

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52090	AT	Annotation by Michelle Graham. TAIR10: DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116	SoyBase	E_val: 2.00E-71	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000418	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase IV complex	SoyBase	N/A	ISS
GO:0000419	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase V complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005665	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex	SoyBase	N/A	ISS
GO:0016591	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, holoenzyme	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG4392	KOG	RNA polymerase, subunit L	JGI		ISS
PTHR13946	Panther	DNA-DIRECTED RNA POLYMERASE I,II,III	JGI		ISS
PTHR13946:SF16	Panther	DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTID	JGI		ISS
PF01193	PFAM	RNA polymerase Rpb3/Rpb11 dimerisation domain	JGI		ISS
UniRef100_C6SW39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW39_SOYBN	SoyBase	E_val: 8.00E-81	ISS
UniRef100_D7LU23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATRPB13.6 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LU23_ARALL	SoyBase	E_val: 1.00E-69	ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Paralog	Evidence	Comments
Glyma09g36280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g008000	Wm82.a2.v1	IGC	As supplied by JGI

Schmutz et al. 2010   Genome sequence of the palaeopolyploid soybean   Nature 2010, 463:178-183