Glyma12g01000 - SoyBase

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Report for Sequence Feature Glyma12g01000

Feature Type:	gene_model
Chromosome:	Gm12
Start:	548739
stop:	552796
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g01000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G16430	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 10 \| chr2:7120502-7122772 REVERSE LENGTH=468	SoyBase	E_val: 0	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G0T433	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytase n=2 Tax=Magnoliophyta RepID=G0T433_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G0T433	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phytase n=2 Tax=Magnoliophyta RepID=G0T433_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma12g01000

Locus	Gene Symbol	Protein Name
	PAP23	Purple acid phosphatase 23 gene
	PAP23	Purple acid phosphatase gene 23

Expression Patterns of Glyma12g01000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g01000 not represented in the dataset	Glyma12g01000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g01000

Paralog	Evidence	Comments
Glyma09g36360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g01000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g007500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g01000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g01000

Limit To All Plant Sequences

>Glyma12g01000.2   sequence type=transcript   gene model=Glyma12g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAATCTTGGCTGAACAACTTCTTTTTCCTATGAGATGGAAGAAAAAATAAATAAGTGAGAGAGATACATGATGTGACGTGAATCAATATTATATTATAGTTTATACTTTATCATTATTTTTATCAGTTCACCGCTTCAACTTAACTGAAGCCATTCATTGGTTTGTTTCTCTTAGTCTTCGCGGTTAACGTAAACTGAACCGTGTTTTTGTCTTTCGAAGAAAACGATGGTAAATGTTGCTTGCTTCACGGACCCTCTGTCTTGTTGACCTCTAATGTGAATATTCCTCATCATATGCCATTCCATTCATTTAACAGTTAATGCACCCTTATCAATTTACCTTATACCAGTACTTATCATTATAAAGATCAGAGAGTGCATTGGAATAATAAATACGCGAGTGTTGCGACCCTGGATCACTAGAATCACGGGTTTTGAGCAAAATGGGTGTTGTGGAGGGTCTCTTGGCATTGGGTTTGATTCTGAATGTGTGTGTTGTGTGCAATGGAGGCACAAGCAGCCCCTTCGTCAGGAAAGTTGAGAAGGCTGTAGATATGCCACTTGACAGCGATGTCTTTGCTATTCCTCCTGGTTATAATGCCCCCCAGCAGGTTCATATAACGCAAGGTGACCTAGTGGGGAAAGCAGTGATCGTGTCATGGGTGACTGTGGATGAGCCGGGGTCGAGCGAAGTGCGTTACTGGAGTGAGAACAGTGACCAGAAGAAGATAGTTGAAGGAAAACTTGTTACTTATAGGTTCTTCAATTACACATCTGGTTTTATTCATCACACCACCATCAGAAATTTGGAGTACAACACCAAATACTACTATGAGGTTGGACTTGGGAACACAACACGGCAGTTTTGGTTTGTGACTCCTCCTGAAATCGGTCCCGATGTGCCATATACATTTGGTCTCATAGGGGATCTTGGTCAGAGTTTTGATTCAAATAAAACTCTTTCTCACTATGAATTGAACCCAAGAAAAGGACAAACTGTACTATTCGTTGGAGACCTCTCTTATGCGGATAACTACCCAAATCATGATAACATTAGGTGGGATTCTTGGGGAAGGTTTACAGAAAGGAGTGTTGCTTATCAACCATGGATATGGACTGCAGGAAACCATGAAATTGATTTTGCTCCAGAAATTGGTGAAACTGTACCTTTCAAGCCTTATACCCACCGTTACCATGTTCCTTATAAAGCATCTCAAAGTACTTCACCCTTCTGGTATTCTATCAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTATAATAGCTACAATTATCACTATATGGAAGGGGAAACAATGAGAGTCATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTGAGCGTGTTTCCAATGTTGCATACAATATTGTAAATGGTCTTTGTGCTCCTGTAAATGATAAATCAGCTCCTGTATATATAACCATTGGGGATGGAGGAAACCTTGAAGGTTTAGCAACCAACATGACAGAACCACAGCCAAAGTATTCTGCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTATAGCTGGCACCGAAATCAAGATGGAGTTGCTGTGGAGGCCGATTCCCTTTGGTTTTTCAACAGATACTGGCACCCAGTTGATGATTCCACTGCTCATGTTTCACATTAACACAGATTCACTTGTCTTATGAGAAGAATACCAAATGTCATGTCAATAAATTCATGAGTCGACAATTGATTGTGGCACTGCATAAACACAAAAACAGCTCCTTCTCAAATCCATCATCAAATACGCGTCTCAACATTTCTTCAGCACGGTAGCATTTTGATGCAGAAAAGATAAATCTTAGAGCTTTACCCTTTGCACCCCATTGATTGAATAGTAAAGGACGGTTGAAAATGGAAGCTGATCACAAAAAATTATAGTTTTGTTTTTGTTTTGCCACCTTCCATTGCCCTTATTCCTTCTTAAAGTATGTATGAATGTACAAGAGCTTAGGAGGAATCTGGTGTTTTACTGTGAATTTTGTTTTGAGATACTTGTCATAAATAAATTTGCAGAGTAATTATCGAATATTATTTTTTTT

Coding sequences of Glyma12g01000

Limit To All Plant Sequences

>Glyma12g01000.1   sequence type=CDS   gene model=Glyma12g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTGTGGAGGGTCTCTTGGCATTGGGTTTGATTCTGAATGTGTGTGTTGTGTGCAATGGAGGCACAAGCAGCCCCTTCGTCAGGAAAGTTGAGAAGGCTGTAGATATGCCACTTGACAGCGATGTCTTTGCTATTCCTCCTGGTTATAATGCCCCCCAGCAGGTTCATATAACGCAAGGTGACCTAGTGGGGAAAGCAGTGATCGTGTCATGGGTGACTGTGGATGAGCCGGGGTCGAGCGAAGTGCGTTACTGGAGTGAGAACAGTGACCAGAAGAAGATAGTTGAAGGAAAACTTGTTACTTATAGGTTCTTCAATTACACATCTGGTTTTATTCATCACACCACCATCAGAAATTTGGAGTACAACACCAAATACTACTATGAGGTTGGACTTGGGAACACAACACGGCAGTTTTGGTTTGTGACTCCTCCTGAAATCGGTCCCGATGTGCCATATACATTTGGTCTCATAGGGGATCTTGGTCAGAGTTTTGATTCAAATAAAACTCTTTCTCACTATGAATTGAACCCAAGAAAAGGACAAACTGTACTATTCGTTGGAGACCTCTCTTATGCGGATAACTACCCAAATCATGATAACATTAGGTGGGATTCTTGGGGAAGGTTTACAGAAAGGAGTGTTGCTTATCAACCATGGATATGGACTGCAGGAAACCATGAAATTGATTTTGCTCCAGAAATTGGTGAAACTGTACCTTTCAAGCCTTATACCCACCGTTACCATGTTCCTTATAAAGCATCTCAAAGTACTTCACCCTTCTGGTATTCTATCAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTATAATAGCTACAATTATCACTATATGGAAGGGGAAACAATGAGAGTCATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTGAGCGTGTTTCCAATGTTGCATACAATATTGTAAATGGTCTTTGTGCTCCTGTAAATGATAAATCAGCTCCTGTATATATAACCATTGGGGATGGAGGAAACCTTGAAGGTTTAGCAACCAACATGACAGAACCACAGCCAAAGTATTCTGCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTATAGCTGGCACCGAAATCAAGATGGAGTTGCTGTGGAGGCCGATTCCCTTTGGTTTTTCAACAGATACTGGCACCCAGTTGATGATTCCACTGCTCATGTTTCACATTAA

>Glyma12g01000.2   sequence type=CDS   gene model=Glyma12g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTGTGGAGGGTCTCTTGGCATTGGGTTTGATTCTGAATGTGTGTGTTGTGTGCAATGGAGGCACAAGCAGCCCCTTCGTCAGGAAAGTTGAGAAGGCTGTAGATATGCCACTTGACAGCGATGTCTTTGCTATTCCTCCTGGTTATAATGCCCCCCAGCAGGTTCATATAACGCAAGGTGACCTAGTGGGGAAAGCAGTGATCGTGTCATGGGTGACTGTGGATGAGCCGGGGTCGAGCGAAGTGCGTTACTGGAGTGAGAACAGTGACCAGAAGAAGATAGTTGAAGGAAAACTTGTTACTTATAGGTTCTTCAATTACACATCTGGTTTTATTCATCACACCACCATCAGAAATTTGGAGTACAACACCAAATACTACTATGAGGTTGGACTTGGGAACACAACACGGCAGTTTTGGTTTGTGACTCCTCCTGAAATCGGTCCCGATGTGCCATATACATTTGGTCTCATAGGGGATCTTGGTCAGAGTTTTGATTCAAATAAAACTCTTTCTCACTATGAATTGAACCCAAGAAAAGGACAAACTGTACTATTCGTTGGAGACCTCTCTTATGCGGATAACTACCCAAATCATGATAACATTAGGTGGGATTCTTGGGGAAGGTTTACAGAAAGGAGTGTTGCTTATCAACCATGGATATGGACTGCAGGAAACCATGAAATTGATTTTGCTCCAGAAATTGGTGAAACTGTACCTTTCAAGCCTTATACCCACCGTTACCATGTTCCTTATAAAGCATCTCAAAGTACTTCACCCTTCTGGTATTCTATCAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTATAATAGCTACAATTATCACTATATGGAAGGGGAAACAATGAGAGTCATGTATGAGCCCTGGTTTGTGCAGTACAAGGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTATGAACGATCTGAGCGTGTTTCCAATGTTGCATACAATATTGTAAATGGTCTTTGTGCTCCTGTAAATGATAAATCAGCTCCTGTATATATAACCATTGGGGATGGAGGAAACCTTGAAGGTTTAGCAACCAACATGACAGAACCACAGCCAAAGTATTCTGCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTATAGCTGGCACCGAAATCAAGATGGAGTTGCTGTGGAGGCCGATTCCCTTTGGTTTTTCAACAGATACTGGCACCCAGTTGATGATTCCACTGCTCATGTTTCACATTAA

Predicted protein sequences of Glyma12g01000

Limit To All Plant Sequences

>Glyma12g01000.1   sequence type=predicted peptide   gene model=Glyma12g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVEGLLALGLILNVCVVCNGGTSSPFVRKVEKAVDMPLDSDVFAIPPGYNAPQQVHITQGDLVGKAVIVSWVTVDEPGSSEVRYWSENSDQKKIVEGKLVTYRFFNYTSGFIHHTTIRNLEYNTKYYYEVGLGNTTRQFWFVTPPEIGPDVPYTFGLIGDLGQSFDSNKTLSHYELNPRKGQTVLFVGDLSYADNYPNHDNIRWDSWGRFTERSVAYQPWIWTAGNHEIDFAPEIGETVPFKPYTHRYHVPYKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYKWLEKELPKVNRTETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERVSNVAYNIVNGLCAPVNDKSAPVYITIGDGGNLEGLATNMTEPQPKYSAFREASFGHAIFDITNRTHAHYSWHRNQDGVAVEADSLWFFNRYWHPVDDSTAHVSH*

>Glyma12g01000.2   sequence type=predicted peptide   gene model=Glyma12g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVEGLLALGLILNVCVVCNGGTSSPFVRKVEKAVDMPLDSDVFAIPPGYNAPQQVHITQGDLVGKAVIVSWVTVDEPGSSEVRYWSENSDQKKIVEGKLVTYRFFNYTSGFIHHTTIRNLEYNTKYYYEVGLGNTTRQFWFVTPPEIGPDVPYTFGLIGDLGQSFDSNKTLSHYELNPRKGQTVLFVGDLSYADNYPNHDNIRWDSWGRFTERSVAYQPWIWTAGNHEIDFAPEIGETVPFKPYTHRYHVPYKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYKWLEKELPKVNRTETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERVSNVAYNIVNGLCAPVNDKSAPVYITIGDGGNLEGLATNMTEPQPKYSAFREASFGHAIFDITNRTHAHYSWHRNQDGVAVEADSLWFFNRYWHPVDDSTAHVSH*

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